Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.92□□□□□ -1.62
MSX1P28360 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
MSX1P28360 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
MSX1P28360 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
MSX1P28360 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC4.92□□□□□ -1.62
MSX1P28360 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC4.92□□□□□ -1.62
MSX1P28360 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC4.92□□□□□ -1.62
MSX1P28360 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
MSX1P28360 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.91□□□□□ -1.62
MSX1P28360 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC4.91□□□□□ -1.62
MSX1P28360 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
MSX1P28360 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC4.91□□□□□ -1.62
MSX1P28360 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
MSX1P28360 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC4.91□□□□□ -1.62
MSX1P28360 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC4.91□□□□□ -1.62
MSX1P28360 RNU6-336P-201ENST00000364891 107 ntBASIC4.91□□□□□ -1.62
MSX1P28360 SNORA70.6-201ENST00000383934 134 ntBASIC4.91□□□□□ -1.62
MSX1P28360 MIR34A-201ENST00000385130 110 ntBASIC4.91□□□□□ -1.62
MSX1P28360 RNU6-1168P-201ENST00000390831 104 ntBASIC4.91□□□□□ -1.62
MSX1P28360 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC4.91□□□□□ -1.62
MSX1P28360 AC009296.1-201ENST00000443146 155 ntBASIC4.91□□□□□ -1.62
MSX1P28360 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC4.91□□□□□ -1.62
MSX1P28360 EIF4A1P11-201ENST00000451239 222 ntBASIC4.91□□□□□ -1.62
MSX1P28360 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC4.91□□□□□ -1.62
MSX1P28360 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC4.91□□□□□ -1.62
MSX1P28360 SNORD2.1-201ENST00000458762 69 ntBASIC4.91□□□□□ -1.62
MSX1P28360 UBE2Q2P9-201ENST00000490086 202 ntBASIC4.91□□□□□ -1.62
MSX1P28360 AL160314.1-201ENST00000490836 438 ntBASIC4.91□□□□□ -1.62
MSX1P28360 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC4.91□□□□□ -1.62
MSX1P28360 SMILR-201ENST00000533992 553 ntTSL 4 BASIC4.91□□□□□ -1.62
MSX1P28360 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC4.91□□□□□ -1.62
MSX1P28360 NDUFB4P11-201ENST00000560510 395 ntBASIC4.91□□□□□ -1.62
MSX1P28360 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.91□□□□□ -1.62
MSX1P28360 AC244107.2-201ENST00000611773 76 ntBASIC4.91□□□□□ -1.62
MSX1P28360 AC091895.1-201ENST00000624494 256 ntBASIC4.91□□□□□ -1.62
MSX1P28360 SCARNA4-201ENST00000629045 128 ntBASIC4.91□□□□□ -1.62
MSX1P28360 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC4.91□□□□□ -1.62
MSX1P28360 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
MSX1P28360 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
MSX1P28360 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC4.91□□□□□ -1.62
MSX1P28360 AC116096.1-201ENST00000566804 2314 ntBASIC4.91□□□□□ -1.62
MSX1P28360 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
MSX1P28360 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC4.91□□□□□ -1.62
MSX1P28360 MUC2-202ENST00000613187 4845 ntBASIC4.91□□□□□ -1.62
MSX1P28360 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
MSX1P28360 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
MSX1P28360 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC4.91□□□□□ -1.62
MSX1P28360 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
MSX1P28360 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.62
MSX1P28360 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC4.9□□□□□ -1.62
MSX1P28360 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
MSX1P28360 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.9□□□□□ -1.62
MSX1P28360 MIR133B-201ENST00000362210 119 ntBASIC4.9□□□□□ -1.63
MSX1P28360 MIR410-201ENST00000362222 80 ntBASIC4.9□□□□□ -1.63
MSX1P28360 RN7SKP145-201ENST00000363291 303 ntBASIC4.9□□□□□ -1.63
MSX1P28360 Y_RNA.308-201ENST00000365043 101 ntBASIC4.9□□□□□ -1.63
MSX1P28360 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
MSX1P28360 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
MSX1P28360 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.9□□□□□ -1.63
MSX1P28360 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC4.9□□□□□ -1.63
MSX1P28360 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC4.9□□□□□ -1.63
MSX1P28360 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC4.9□□□□□ -1.63
MSX1P28360 AL049874.1-201ENST00000489560 388 ntBASIC4.9□□□□□ -1.63
MSX1P28360 ENSA-210ENST00000503241 574 ntTSL 3 BASIC4.9□□□□□ -1.63
MSX1P28360 AP004607.2-201ENST00000533949 322 ntBASIC4.9□□□□□ -1.63
MSX1P28360 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
MSX1P28360 RPL23AP88-201ENST00000605759 454 ntBASIC4.9□□□□□ -1.63
MSX1P28360 SSX9-202ENST00000608568 580 ntTSL 4 BASIC4.9□□□□□ -1.63
MSX1P28360 RMST_6.1-201ENST00000611980 203 ntBASIC4.9□□□□□ -1.63
MSX1P28360 U4.7-201ENST00000638126 106 ntBASIC4.9□□□□□ -1.63
MSX1P28360 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
MSX1P28360 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC4.9□□□□□ -1.63
MSX1P28360 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
MSX1P28360 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.63
MSX1P28360 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
MSX1P28360 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC4.89□□□□□ -1.63
MSX1P28360 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
MSX1P28360 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
MSX1P28360 HSP90AA4P-202ENST00000506915 2228 ntBASIC4.89□□□□□ -1.63
MSX1P28360 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC4.89□□□□□ -1.63
MSX1P28360 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
MSX1P28360 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.89□□□□□ -1.63
MSX1P28360 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.89□□□□□ -1.63
MSX1P28360 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.89□□□□□ -1.63
MSX1P28360 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
MSX1P28360 RPL23P2-201ENST00000320371 421 ntBASIC4.89□□□□□ -1.63
MSX1P28360 RN7SKP153-201ENST00000365026 316 ntBASIC4.89□□□□□ -1.63
MSX1P28360 RNU5E-7P-201ENST00000365290 117 ntBASIC4.89□□□□□ -1.63
MSX1P28360 SNORD116-18-201ENST00000383961 92 ntBASIC4.89□□□□□ -1.63
MSX1P28360 SNORA16A-201ENST00000384342 137 ntBASIC4.89□□□□□ -1.63
MSX1P28360 MIR514A1-201ENST00000385133 98 ntBASIC4.89□□□□□ -1.63
MSX1P28360 SNORA46.1-201ENST00000391069 153 ntBASIC4.89□□□□□ -1.63
MSX1P28360 SNORD12B-201ENST00000410433 91 ntBASIC4.89□□□□□ -1.63
MSX1P28360 Y_RNA.629-201ENST00000411368 105 ntBASIC4.89□□□□□ -1.63
MSX1P28360 CKS1BP5-201ENST00000434172 273 ntBASIC4.89□□□□□ -1.63
MSX1P28360 RPL12P46-201ENST00000436610 195 ntBASIC4.89□□□□□ -1.63
MSX1P28360 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC4.89□□□□□ -1.63
MSX1P28360 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC4.89□□□□□ -1.63
MSX1P28360 RPL23AP24-201ENST00000458203 385 ntBASIC4.89□□□□□ -1.63
MSX1P28360 RN7SL860P-201ENST00000473738 223 ntBASIC4.89□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 113.1 ms