Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 TPMTP3-201ENST00000411928 735 ntBASIC1.52□□□□□ -2.17
HLA-DMBP28068 MTCO2P5-201ENST00000422621 426 ntBASIC1.52□□□□□ -2.17
HLA-DMBP28068 AC003685.2-201ENST00000422795 395 ntBASIC1.52□□□□□ -2.17
HLA-DMBP28068 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC1.52□□□□□ -2.17
HLA-DMBP28068 AC007919.1-201ENST00000429380 217 ntBASIC1.52□□□□□ -2.17
HLA-DMBP28068 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC1.52□□□□□ -2.17
HLA-DMBP28068 AC098831.1-201ENST00000440661 216 ntBASIC1.52□□□□□ -2.17
HLA-DMBP28068 FDX1P2-201ENST00000450769 375 ntBASIC1.52□□□□□ -2.17
HLA-DMBP28068 ATG12P2-201ENST00000456830 416 ntBASIC1.52□□□□□ -2.17
HLA-DMBP28068 AC072039.1-201ENST00000477611 581 ntBASIC1.52□□□□□ -2.17
HLA-DMBP28068 AC068781.1-201ENST00000488231 618 ntBASIC1.52□□□□□ -2.17
HLA-DMBP28068 RN7SL274P-201ENST00000492268 272 ntBASIC1.52□□□□□ -2.17
HLA-DMBP28068 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
HLA-DMBP28068 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC1.52□□□□□ -2.17
HLA-DMBP28068 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC1.52□□□□□ -2.17
HLA-DMBP28068 SCARNA3-201ENST00000517097 143 ntBASIC1.52□□□□□ -2.17
HLA-DMBP28068 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC1.52□□□□□ -2.17
HLA-DMBP28068 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.52□□□□□ -2.17
HLA-DMBP28068 MIR5089-201ENST00000580047 84 ntBASIC1.52□□□□□ -2.17
HLA-DMBP28068 MIR3199-1-201ENST00000582434 88 ntBASIC1.52□□□□□ -2.17
HLA-DMBP28068 AL391813.1-201ENST00000603098 260 ntBASIC1.52□□□□□ -2.17
HLA-DMBP28068 AL021997.1-201ENST00000605757 193 ntBASIC1.52□□□□□ -2.17
HLA-DMBP28068 AL161423.1-201ENST00000613700 262 ntBASIC1.52□□□□□ -2.17
HLA-DMBP28068 AP001486.3-201ENST00000615334 372 ntBASIC1.52□□□□□ -2.17
HLA-DMBP28068 AL162373.1-201ENST00000620433 407 ntBASIC1.52□□□□□ -2.17
HLA-DMBP28068 AP003400.5-201ENST00000624827 617 ntBASIC1.52□□□□□ -2.17
HLA-DMBP28068 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC1.52□□□□□ -2.17
HLA-DMBP28068 HPVC1-201ENST00000629899 1198 ntBASIC1.52□□□□□ -2.17
HLA-DMBP28068 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.52□□□□□ -2.17
HLA-DMBP28068 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.51□□□□□ -2.17
HLA-DMBP28068 RNA5SP125-201ENST00000364843 120 ntBASIC1.51□□□□□ -2.17
HLA-DMBP28068 RNU1-148P-201ENST00000384472 162 ntBASIC1.51□□□□□ -2.17
HLA-DMBP28068 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
HLA-DMBP28068 RNU2-20P-201ENST00000410425 191 ntBASIC1.51□□□□□ -2.17
HLA-DMBP28068 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC1.51□□□□□ -2.17
HLA-DMBP28068 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC1.51□□□□□ -2.17
HLA-DMBP28068 MED14P1-201ENST00000430517 648 ntBASIC1.51□□□□□ -2.17
HLA-DMBP28068 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC1.51□□□□□ -2.17
HLA-DMBP28068 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC1.51□□□□□ -2.17
HLA-DMBP28068 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC1.51□□□□□ -2.17
HLA-DMBP28068 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC1.51□□□□□ -2.17
HLA-DMBP28068 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC1.51□□□□□ -2.17
HLA-DMBP28068 RGS5-217ENST00000451759 835 ntTSL 3 BASIC1.51□□□□□ -2.17
HLA-DMBP28068 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC1.51□□□□□ -2.17
HLA-DMBP28068 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC1.51□□□□□ -2.17
HLA-DMBP28068 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC1.51□□□□□ -2.17
HLA-DMBP28068 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC1.51□□□□□ -2.17
HLA-DMBP28068 RN7SKP31-201ENST00000516354 278 ntBASIC1.51□□□□□ -2.17
HLA-DMBP28068 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC1.51□□□□□ -2.17
HLA-DMBP28068 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC1.51□□□□□ -2.17
HLA-DMBP28068 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC1.51□□□□□ -2.17
HLA-DMBP28068 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC1.51□□□□□ -2.17
HLA-DMBP28068 AC079148.1-201ENST00000565944 819 ntBASIC1.51□□□□□ -2.17
HLA-DMBP28068 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.51□□□□□ -2.17
HLA-DMBP28068 AC098826.3-201ENST00000603823 466 ntBASIC1.51□□□□□ -2.17
HLA-DMBP28068 AC104763.2-201ENST00000604179 382 ntBASIC1.51□□□□□ -2.17
HLA-DMBP28068 AC026741.1-201ENST00000605892 482 ntBASIC1.51□□□□□ -2.17
HLA-DMBP28068 AC012467.1-201ENST00000607740 256 ntBASIC1.51□□□□□ -2.17
HLA-DMBP28068 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC1.51□□□□□ -2.17
HLA-DMBP28068 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC1.51□□□□□ -2.17
HLA-DMBP28068 AC010678.1-201ENST00000614118 713 ntBASIC1.51□□□□□ -2.17
HLA-DMBP28068 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC1.51□□□□□ -2.17
HLA-DMBP28068 MIR7843-201ENST00000622274 79 ntBASIC1.51□□□□□ -2.17
HLA-DMBP28068 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC1.51□□□□□ -2.17
HLA-DMBP28068 AC073592.7-201ENST00000623659 507 ntBASIC1.51□□□□□ -2.17
HLA-DMBP28068 AL359757.2-201ENST00000624309 274 ntBASIC1.51□□□□□ -2.17
HLA-DMBP28068 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
HLA-DMBP28068 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.51□□□□□ -2.17
HLA-DMBP28068 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
HLA-DMBP28068 AC110491.1-201ENST00000562191 2010 ntBASIC1.5□□□□□ -2.17
HLA-DMBP28068 AL356473.1-201ENST00000406203 1408 ntBASIC1.5□□□□□ -2.17
HLA-DMBP28068 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
HLA-DMBP28068 RNU6-609P-201ENST00000365459 107 ntBASIC1.5□□□□□ -2.17
HLA-DMBP28068 RNU6-354P-201ENST00000383862 107 ntBASIC1.5□□□□□ -2.17
HLA-DMBP28068 RNU6-610P-201ENST00000384264 107 ntBASIC1.5□□□□□ -2.17
HLA-DMBP28068 MIR676-201ENST00000390702 67 ntBASIC1.5□□□□□ -2.17
HLA-DMBP28068 CIR1P3-201ENST00000405137 479 ntBASIC1.5□□□□□ -2.17
HLA-DMBP28068 SUMO2P12-201ENST00000405924 140 ntBASIC1.5□□□□□ -2.17
HLA-DMBP28068 GSTA9P-201ENST00000406231 611 ntBASIC1.5□□□□□ -2.17
HLA-DMBP28068 USP9YP19-201ENST00000412165 485 ntBASIC1.5□□□□□ -2.17
HLA-DMBP28068 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC1.5□□□□□ -2.17
HLA-DMBP28068 USP9YP13-201ENST00000417797 480 ntBASIC1.5□□□□□ -2.17
HLA-DMBP28068 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC1.5□□□□□ -2.17
HLA-DMBP28068 ZYG11AP1-201ENST00000430329 837 ntBASIC1.5□□□□□ -2.17
HLA-DMBP28068 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC1.5□□□□□ -2.17
HLA-DMBP28068 AC124916.1-201ENST00000444020 547 ntBASIC1.5□□□□□ -2.17
HLA-DMBP28068 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC1.5□□□□□ -2.17
HLA-DMBP28068 OFD1P7Y-201ENST00000454643 1155 ntBASIC1.5□□□□□ -2.17
HLA-DMBP28068 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC1.5□□□□□ -2.17
HLA-DMBP28068 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC1.5□□□□□ -2.17
HLA-DMBP28068 MTAPP1-201ENST00000489154 819 ntBASIC1.5□□□□□ -2.17
HLA-DMBP28068 RPS27AP10-201ENST00000496103 208 ntBASIC1.5□□□□□ -2.17
HLA-DMBP28068 RPL38P4-201ENST00000502376 214 ntBASIC1.5□□□□□ -2.17
HLA-DMBP28068 AC008837.1-201ENST00000511513 412 ntBASIC1.5□□□□□ -2.17
HLA-DMBP28068 SNORA31.25-201ENST00000517242 134 ntBASIC1.5□□□□□ -2.17
HLA-DMBP28068 EEF1A1P37-201ENST00000522748 715 ntBASIC1.5□□□□□ -2.17
HLA-DMBP28068 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC1.5□□□□□ -2.17
HLA-DMBP28068 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC1.5□□□□□ -2.17
HLA-DMBP28068 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC1.5□□□□□ -2.17
HLA-DMBP28068 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.5□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 84.2 ms