Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC4.65□□□□□ -1.66
COL8A1P27658 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
COL8A1P27658 FTLP6-201ENST00000355274 422 ntBASIC4.65□□□□□ -1.67
COL8A1P27658 Y_RNA.172-201ENST00000363765 102 ntBASIC4.65□□□□□ -1.67
COL8A1P27658 RNU6-741P-201ENST00000383889 107 ntBASIC4.65□□□□□ -1.67
COL8A1P27658 RNU6-20P-201ENST00000384106 107 ntBASIC4.65□□□□□ -1.67
COL8A1P27658 RNU6-17P-201ENST00000384245 107 ntBASIC4.65□□□□□ -1.67
COL8A1P27658 RNU6-18P-201ENST00000384527 107 ntBASIC4.65□□□□□ -1.67
COL8A1P27658 AL078599.1-201ENST00000402075 293 ntBASIC4.65□□□□□ -1.67
COL8A1P27658 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC4.65□□□□□ -1.67
COL8A1P27658 RPL30P3-201ENST00000424262 333 ntBASIC4.65□□□□□ -1.67
COL8A1P27658 AC004975.1-201ENST00000428733 208 ntBASIC4.65□□□□□ -1.67
COL8A1P27658 AL358472.1-201ENST00000431295 329 ntBASIC4.65□□□□□ -1.67
COL8A1P27658 TMEM183AP1-205ENST00000432739 290 ntBASIC4.65□□□□□ -1.67
COL8A1P27658 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.65□□□□□ -1.67
COL8A1P27658 RPL7L1P1-201ENST00000448259 785 ntBASIC4.65□□□□□ -1.67
COL8A1P27658 TEX41-209ENST00000451478 452 ntTSL 2 BASIC4.65□□□□□ -1.67
COL8A1P27658 TRBV5-2-201ENST00000489095 273 ntBASIC4.65□□□□□ -1.67
COL8A1P27658 Y_RNA.797-201ENST00000515977 94 ntBASIC4.65□□□□□ -1.67
COL8A1P27658 RNU6-567P-201ENST00000516746 107 ntBASIC4.65□□□□□ -1.67
COL8A1P27658 RN7SKP272-201ENST00000516988 232 ntBASIC4.65□□□□□ -1.67
COL8A1P27658 AC022616.8-201ENST00000533569 253 ntBASIC4.65□□□□□ -1.67
COL8A1P27658 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC4.65□□□□□ -1.67
COL8A1P27658 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
COL8A1P27658 OR4H12P-201ENST00000556269 907 ntBASIC4.65□□□□□ -1.67
COL8A1P27658 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC4.65□□□□□ -1.67
COL8A1P27658 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC4.65□□□□□ -1.67
COL8A1P27658 MIR92B-201ENST00000607575 96 ntBASIC4.65□□□□□ -1.67
COL8A1P27658 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC4.65□□□□□ -1.67
COL8A1P27658 MIR6830-201ENST00000636015 70 ntBASIC4.65□□□□□ -1.67
COL8A1P27658 Clostridiales-1.2-201ENST00000636724 160 ntBASIC4.65□□□□□ -1.67
COL8A1P27658 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
COL8A1P27658 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
COL8A1P27658 AL355834.1-201ENST00000556602 3965 ntBASIC4.65□□□□□ -1.67
COL8A1P27658 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.67
COL8A1P27658 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC4.65□□□□□ -1.67
COL8A1P27658 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
COL8A1P27658 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC4.64□□□□□ -1.67
COL8A1P27658 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC4.64□□□□□ -1.67
COL8A1P27658 ST7-212ENST00000422922 1887 ntTSL 5 BASIC4.64□□□□□ -1.67
COL8A1P27658 AC004076.2-201ENST00000620532 3323 ntBASIC4.64□□□□□ -1.67
COL8A1P27658 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC4.64□□□□□ -1.67
COL8A1P27658 AL365440.1-201ENST00000436135 2167 ntBASIC4.64□□□□□ -1.67
COL8A1P27658 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
COL8A1P27658 AP005435.3-201ENST00000531260 3198 ntBASIC4.64□□□□□ -1.67
COL8A1P27658 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL8A1P27658 LARS-201ENST00000274562 2213 ntTSL 2 BASIC4.64□□□□□ -1.67
COL8A1P27658 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.64□□□□□ -1.67
COL8A1P27658 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL8A1P27658 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL8A1P27658 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL8A1P27658 AC109446.4-201ENST00000623235 2755 ntBASIC4.64□□□□□ -1.67
COL8A1P27658 RNA5SP388-201ENST00000362584 119 ntBASIC4.64□□□□□ -1.67
COL8A1P27658 RN7SKP284-201ENST00000411002 343 ntBASIC4.64□□□□□ -1.67
COL8A1P27658 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC4.64□□□□□ -1.67
COL8A1P27658 FTLP19-201ENST00000433300 394 ntBASIC4.64□□□□□ -1.67
COL8A1P27658 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC4.64□□□□□ -1.67
COL8A1P27658 AC112498.1-201ENST00000444401 332 ntBASIC4.64□□□□□ -1.67
COL8A1P27658 TDGF1P1-201ENST00000445734 527 ntBASIC4.64□□□□□ -1.67
COL8A1P27658 RPL23AP3-201ENST00000453844 468 ntBASIC4.64□□□□□ -1.67
COL8A1P27658 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC4.64□□□□□ -1.67
COL8A1P27658 RPS5P7-201ENST00000456664 608 ntBASIC4.64□□□□□ -1.67
COL8A1P27658 AC097484.1-201ENST00000471148 389 ntBASIC4.64□□□□□ -1.67
COL8A1P27658 RPL23AP45-201ENST00000476406 468 ntBASIC4.64□□□□□ -1.67
COL8A1P27658 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC4.64□□□□□ -1.67
COL8A1P27658 AK3P2-201ENST00000507976 429 ntBASIC4.64□□□□□ -1.67
COL8A1P27658 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC4.64□□□□□ -1.67
COL8A1P27658 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC4.64□□□□□ -1.67
COL8A1P27658 RN7SKP21-201ENST00000516503 220 ntBASIC4.64□□□□□ -1.67
COL8A1P27658 RNU6-347P-201ENST00000516658 105 ntBASIC4.64□□□□□ -1.67
COL8A1P27658 Y_RNA.712-201ENST00000517011 92 ntBASIC4.64□□□□□ -1.67
COL8A1P27658 AC090049.2-201ENST00000550377 109 ntBASIC4.64□□□□□ -1.67
COL8A1P27658 TRAV28-201ENST00000557548 323 ntBASIC4.64□□□□□ -1.67
COL8A1P27658 NDUFB4P11-201ENST00000560510 395 ntBASIC4.64□□□□□ -1.67
COL8A1P27658 BNIP3P5-201ENST00000562290 498 ntBASIC4.64□□□□□ -1.67
COL8A1P27658 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
COL8A1P27658 AC023575.1-201ENST00000580510 358 ntBASIC4.64□□□□□ -1.67
COL8A1P27658 MIR5096-201ENST00000583713 70 ntBASIC4.64□□□□□ -1.67
COL8A1P27658 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC4.64□□□□□ -1.67
COL8A1P27658 AC005046.1-201ENST00000608515 625 ntBASIC4.64□□□□□ -1.67
COL8A1P27658 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC4.64□□□□□ -1.67
COL8A1P27658 MIR3658-201ENST00000636291 56 ntBASIC4.64□□□□□ -1.67
COL8A1P27658 MIR4275-201ENST00000636486 87 ntBASIC4.64□□□□□ -1.67
COL8A1P27658 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL8A1P27658 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
COL8A1P27658 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
COL8A1P27658 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL8A1P27658 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
COL8A1P27658 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL8A1P27658 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
COL8A1P27658 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
COL8A1P27658 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL8A1P27658 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC4.63□□□□□ -1.67
COL8A1P27658 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC4.63□□□□□ -1.67
COL8A1P27658 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC4.63□□□□□ -1.67
COL8A1P27658 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL8A1P27658 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
COL8A1P27658 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
COL8A1P27658 AL360270.2-201ENST00000562952 5985 ntBASIC4.63□□□□□ -1.67
COL8A1P27658 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC4.63□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms