Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC4.48□□□□□ -1.69
COL6A1P12109 AP000763.2-201ENST00000540641 163 ntBASIC4.48□□□□□ -1.69
COL6A1P12109 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.48□□□□□ -1.69
COL6A1P12109 AL163153.1-201ENST00000554223 283 ntBASIC4.48□□□□□ -1.69
COL6A1P12109 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC4.48□□□□□ -1.69
COL6A1P12109 AC124303.1-201ENST00000605703 360 ntBASIC4.48□□□□□ -1.69
COL6A1P12109 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC4.48□□□□□ -1.69
COL6A1P12109 AL390240.1-201ENST00000612950 384 ntBASIC4.48□□□□□ -1.69
COL6A1P12109 AP001486.3-201ENST00000615334 372 ntBASIC4.48□□□□□ -1.69
COL6A1P12109 AL359757.2-201ENST00000624309 274 ntBASIC4.48□□□□□ -1.69
COL6A1P12109 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC4.48□□□□□ -1.69
COL6A1P12109 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
COL6A1P12109 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.48□□□□□ -1.69
COL6A1P12109 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL6A1P12109 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL6A1P12109 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC4.47□□□□□ -1.69
COL6A1P12109 RNU6-1078P-201ENST00000364522 103 ntBASIC4.47□□□□□ -1.69
COL6A1P12109 Y_RNA.339-201ENST00000365325 102 ntBASIC4.47□□□□□ -1.69
COL6A1P12109 RNU6-1074P-201ENST00000383995 104 ntBASIC4.47□□□□□ -1.69
COL6A1P12109 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL6A1P12109 MIR548K-201ENST00000408406 116 ntBASIC4.47□□□□□ -1.69
COL6A1P12109 SNORA3.3-201ENST00000408712 125 ntBASIC4.47□□□□□ -1.69
COL6A1P12109 RPL37P10-201ENST00000412884 288 ntBASIC4.47□□□□□ -1.69
COL6A1P12109 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.47□□□□□ -1.69
COL6A1P12109 AC018630.2-202ENST00000422992 927 ntBASIC4.47□□□□□ -1.69
COL6A1P12109 AL358472.1-201ENST00000431295 329 ntBASIC4.47□□□□□ -1.69
COL6A1P12109 CYCSP32-201ENST00000440548 321 ntBASIC4.47□□□□□ -1.69
COL6A1P12109 AC016696.1-201ENST00000446949 318 ntBASIC4.47□□□□□ -1.69
COL6A1P12109 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC4.47□□□□□ -1.69
COL6A1P12109 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC4.47□□□□□ -1.69
COL6A1P12109 RPL36AP13-201ENST00000457490 317 ntBASIC4.47□□□□□ -1.69
COL6A1P12109 RNU7-66P-201ENST00000459469 62 ntBASIC4.47□□□□□ -1.69
COL6A1P12109 PPIAP15-201ENST00000479662 484 ntBASIC4.47□□□□□ -1.69
COL6A1P12109 AC106707.2-201ENST00000484182 374 ntBASIC4.47□□□□□ -1.69
COL6A1P12109 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC4.47□□□□□ -1.69
COL6A1P12109 TRBVA-201ENST00000498804 316 ntBASIC4.47□□□□□ -1.69
COL6A1P12109 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC4.47□□□□□ -1.69
COL6A1P12109 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC4.47□□□□□ -1.69
COL6A1P12109 RNA5SP468-201ENST00000516782 93 ntBASIC4.47□□□□□ -1.69
COL6A1P12109 RNU6-273P-201ENST00000516937 96 ntBASIC4.47□□□□□ -1.69
COL6A1P12109 MYL12AP1-201ENST00000518490 515 ntBASIC4.47□□□□□ -1.69
COL6A1P12109 FAM60DP-201ENST00000524174 632 ntBASIC4.47□□□□□ -1.69
COL6A1P12109 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC4.47□□□□□ -1.69
COL6A1P12109 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
COL6A1P12109 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC4.47□□□□□ -1.69
COL6A1P12109 AC091516.1-201ENST00000549191 703 ntBASIC4.47□□□□□ -1.69
COL6A1P12109 AL355836.1-201ENST00000555951 870 ntBASIC4.47□□□□□ -1.69
COL6A1P12109 RPL21P7-201ENST00000557463 483 ntBASIC4.47□□□□□ -1.69
COL6A1P12109 AL133153.1-201ENST00000557756 303 ntBASIC4.47□□□□□ -1.69
COL6A1P12109 MIR3922-201ENST00000585192 84 ntBASIC4.47□□□□□ -1.69
COL6A1P12109 U3.45-201ENST00000607547 219 ntBASIC4.47□□□□□ -1.69
COL6A1P12109 AC019193.3-201ENST00000609144 554 ntBASIC4.47□□□□□ -1.69
COL6A1P12109 AC005344.1-201ENST00000613391 459 ntBASIC4.47□□□□□ -1.69
COL6A1P12109 AC005086.4-201ENST00000623065 213 ntBASIC4.47□□□□□ -1.69
COL6A1P12109 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL6A1P12109 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL6A1P12109 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL6A1P12109 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
COL6A1P12109 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
COL6A1P12109 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL6A1P12109 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL6A1P12109 AC011266.1-201ENST00000624119 3569 ntBASIC4.47□□□□□ -1.69
COL6A1P12109 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
COL6A1P12109 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.69
COL6A1P12109 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.46□□□□□ -1.7
COL6A1P12109 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.46□□□□□ -1.7
COL6A1P12109 Y_RNA.187-201ENST00000363918 113 ntBASIC4.46□□□□□ -1.7
COL6A1P12109 Y_RNA.197-201ENST00000364004 102 ntBASIC4.46□□□□□ -1.7
COL6A1P12109 MDM4-202ENST00000367180 547 ntTSL 3 BASIC4.46□□□□□ -1.7
COL6A1P12109 PARD3-204ENST00000374768 799 ntTSL 3 BASIC4.46□□□□□ -1.7
COL6A1P12109 RNU6-463P-201ENST00000384340 107 ntBASIC4.46□□□□□ -1.7
COL6A1P12109 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
COL6A1P12109 U3.29-201ENST00000391296 212 ntBASIC4.46□□□□□ -1.7
COL6A1P12109 RNU6-370P-201ENST00000411008 104 ntBASIC4.46□□□□□ -1.7
COL6A1P12109 RAC1P3-201ENST00000416129 580 ntBASIC4.46□□□□□ -1.7
COL6A1P12109 RPL7L1P10-201ENST00000427790 463 ntBASIC4.46□□□□□ -1.7
COL6A1P12109 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC4.46□□□□□ -1.7
COL6A1P12109 RPL35AP22-201ENST00000436855 335 ntBASIC4.46□□□□□ -1.7
COL6A1P12109 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.46□□□□□ -1.7
COL6A1P12109 AL162395.1-201ENST00000457882 422 ntBASIC4.46□□□□□ -1.7
COL6A1P12109 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
COL6A1P12109 HMGB1P22-201ENST00000505315 124 ntBASIC4.46□□□□□ -1.7
COL6A1P12109 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC4.46□□□□□ -1.7
COL6A1P12109 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC4.46□□□□□ -1.7
COL6A1P12109 AC093303.1-201ENST00000514549 295 ntBASIC4.46□□□□□ -1.7
COL6A1P12109 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC4.46□□□□□ -1.7
COL6A1P12109 RNU6-1038P-201ENST00000516516 104 ntBASIC4.46□□□□□ -1.7
COL6A1P12109 SCARNA14-201ENST00000516903 136 ntBASIC4.46□□□□□ -1.7
COL6A1P12109 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC4.46□□□□□ -1.7
COL6A1P12109 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC4.46□□□□□ -1.7
COL6A1P12109 MIR3942-201ENST00000585264 109 ntBASIC4.46□□□□□ -1.7
COL6A1P12109 BNIP3P25-201ENST00000596023 559 ntBASIC4.46□□□□□ -1.7
COL6A1P12109 CTHRC1P1-201ENST00000605383 469 ntBASIC4.46□□□□□ -1.7
COL6A1P12109 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.46□□□□□ -1.7
COL6A1P12109 AC011155.2-201ENST00000623202 216 ntBASIC4.46□□□□□ -1.7
COL6A1P12109 AC091925.2-201ENST00000625059 256 ntBASIC4.46□□□□□ -1.7
COL6A1P12109 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.46□□□□□ -1.7
COL6A1P12109 AC121333.1-201ENST00000567488 2709 ntBASIC4.46□□□□□ -1.7
COL6A1P12109 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
COL6A1P12109 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 90.2 ms