Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 AC004805.2-201ENST00000605382 482 ntBASIC2.28□□□□□ -2.04
LSM1O15116 AC006270.3-201ENST00000605967 1036 ntBASIC2.28□□□□□ -2.04
LSM1O15116 PART1_2.1-201ENST00000612397 250 ntBASIC2.28□□□□□ -2.04
LSM1O15116 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC2.28□□□□□ -2.04
LSM1O15116 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC2.28□□□□□ -2.04
LSM1O15116 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC2.28□□□□□ -2.04
LSM1O15116 AC106858.1-201ENST00000637497 429 ntBASIC2.28□□□□□ -2.04
LSM1O15116 CKAP2P1-201ENST00000555477 2049 ntBASIC2.28□□□□□ -2.04
LSM1O15116 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
LSM1O15116 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.28□□□□□ -2.05
LSM1O15116 AC004520.1-201ENST00000608362 1413 ntBASIC2.27□□□□□ -2.05
LSM1O15116 SNORA3A-201ENST00000364113 130 ntBASIC2.27□□□□□ -2.05
LSM1O15116 RNU6-1000P-201ENST00000391066 106 ntBASIC2.27□□□□□ -2.05
LSM1O15116 RNU6-920P-201ENST00000410926 92 ntBASIC2.27□□□□□ -2.05
LSM1O15116 RNA5SP184-201ENST00000411071 108 ntBASIC2.27□□□□□ -2.05
LSM1O15116 NUP35P1-201ENST00000422734 947 ntBASIC2.27□□□□□ -2.05
LSM1O15116 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC2.27□□□□□ -2.05
LSM1O15116 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC2.27□□□□□ -2.05
LSM1O15116 AC108938.1-201ENST00000451204 136 ntBASIC2.27□□□□□ -2.05
LSM1O15116 AC008481.1-201ENST00000463278 396 ntBASIC2.27□□□□□ -2.05
LSM1O15116 LINC00888-204ENST00000487386 421 ntBASIC2.27□□□□□ -2.05
LSM1O15116 AC096571.1-202ENST00000506634 735 ntBASIC2.27□□□□□ -2.05
LSM1O15116 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC2.27□□□□□ -2.05
LSM1O15116 AC026436.1-201ENST00000510537 270 ntBASIC2.27□□□□□ -2.05
LSM1O15116 RNA5SP356-201ENST00000515972 94 ntBASIC2.27□□□□□ -2.05
LSM1O15116 RNA5SP290-201ENST00000517133 127 ntBASIC2.27□□□□□ -2.05
LSM1O15116 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.27□□□□□ -2.05
LSM1O15116 UBTFL10-201ENST00000528532 562 ntBASIC2.27□□□□□ -2.05
LSM1O15116 EIF4BP1-201ENST00000554881 351 ntBASIC2.27□□□□□ -2.05
LSM1O15116 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.27□□□□□ -2.05
LSM1O15116 AL138976.2-201ENST00000563989 694 ntBASIC2.27□□□□□ -2.05
LSM1O15116 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC2.27□□□□□ -2.05
LSM1O15116 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC2.27□□□□□ -2.05
LSM1O15116 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC2.27□□□□□ -2.05
LSM1O15116 AC103810.6-201ENST00000606708 136 ntBASIC2.27□□□□□ -2.05
LSM1O15116 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC2.27□□□□□ -2.05
LSM1O15116 AC245297.2-201ENST00000610119 565 ntBASIC2.27□□□□□ -2.05
LSM1O15116 AC006386.2-201ENST00000624491 75 ntBASIC2.27□□□□□ -2.05
LSM1O15116 AC012005.1-201ENST00000624575 75 ntBASIC2.27□□□□□ -2.05
LSM1O15116 MTND4P1-201ENST00000457501 1466 ntBASIC2.26□□□□□ -2.05
LSM1O15116 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
LSM1O15116 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
LSM1O15116 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC2.26□□□□□ -2.05
LSM1O15116 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC2.26□□□□□ -2.05
LSM1O15116 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC2.26□□□□□ -2.05
LSM1O15116 MIRLET7G-201ENST00000362280 84 ntBASIC2.26□□□□□ -2.05
LSM1O15116 SNORA80A-201ENST00000363922 136 ntBASIC2.26□□□□□ -2.05
LSM1O15116 SNORD114-30-201ENST00000364448 72 ntBASIC2.26□□□□□ -2.05
LSM1O15116 SNORD116-12-201ENST00000384468 92 ntBASIC2.26□□□□□ -2.05
LSM1O15116 MIR196B-201ENST00000384852 84 ntBASIC2.26□□□□□ -2.05
LSM1O15116 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC2.26□□□□□ -2.05
LSM1O15116 RPL26P27-201ENST00000414397 437 ntBASIC2.26□□□□□ -2.05
LSM1O15116 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC2.26□□□□□ -2.05
LSM1O15116 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC2.26□□□□□ -2.05
LSM1O15116 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC2.26□□□□□ -2.05
LSM1O15116 RSU1P2-202ENST00000437884 485 ntBASIC2.26□□□□□ -2.05
LSM1O15116 AL513328.1-201ENST00000446460 224 ntBASIC2.26□□□□□ -2.05
LSM1O15116 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC2.26□□□□□ -2.05
LSM1O15116 AP000542.1-201ENST00000448473 371 ntBASIC2.26□□□□□ -2.05
LSM1O15116 AL109933.2-201ENST00000452651 260 ntBASIC2.26□□□□□ -2.05
LSM1O15116 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC2.26□□□□□ -2.05
LSM1O15116 AL121769.1-201ENST00000469473 401 ntBASIC2.26□□□□□ -2.05
LSM1O15116 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC2.26□□□□□ -2.05
LSM1O15116 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
LSM1O15116 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
LSM1O15116 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.26□□□□□ -2.05
LSM1O15116 MTND5P13-201ENST00000513046 1079 ntBASIC2.26□□□□□ -2.05
LSM1O15116 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC2.26□□□□□ -2.05
LSM1O15116 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC2.26□□□□□ -2.05
LSM1O15116 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC2.26□□□□□ -2.05
LSM1O15116 MTCO2P15-201ENST00000532655 656 ntBASIC2.26□□□□□ -2.05
LSM1O15116 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC2.26□□□□□ -2.05
LSM1O15116 AL133153.1-201ENST00000557756 303 ntBASIC2.26□□□□□ -2.05
LSM1O15116 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.26□□□□□ -2.05
LSM1O15116 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC2.26□□□□□ -2.05
LSM1O15116 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC2.26□□□□□ -2.05
LSM1O15116 AC131235.4-201ENST00000609288 620 ntBASIC2.26□□□□□ -2.05
LSM1O15116 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC2.26□□□□□ -2.05
LSM1O15116 AC006386.1-201ENST00000619436 415 ntBASIC2.26□□□□□ -2.05
LSM1O15116 AC109809.1-201ENST00000619665 545 ntBASIC2.26□□□□□ -2.05
LSM1O15116 AP000553.5-201ENST00000641933 54 ntBASIC2.26□□□□□ -2.05
LSM1O15116 MTND5P29-201ENST00000458676 1807 ntBASIC2.26□□□□□ -2.05
LSM1O15116 MTND5P33-201ENST00000571250 1450 ntBASIC2.26□□□□□ -2.05
LSM1O15116 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.25□□□□□ -2.05
LSM1O15116 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
LSM1O15116 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.25□□□□□ -2.05
LSM1O15116 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
LSM1O15116 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
LSM1O15116 RNA5SP68-201ENST00000363885 119 ntBASIC2.25□□□□□ -2.05
LSM1O15116 Y_RNA.245-201ENST00000364493 95 ntBASIC2.25□□□□□ -2.05
LSM1O15116 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC2.25□□□□□ -2.05
LSM1O15116 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC2.25□□□□□ -2.05
LSM1O15116 AC244035.1-201ENST00000430042 390 ntBASIC2.25□□□□□ -2.05
LSM1O15116 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.25□□□□□ -2.05
LSM1O15116 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC2.25□□□□□ -2.05
LSM1O15116 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC2.25□□□□□ -2.05
LSM1O15116 CECR9-201ENST00000453421 199 ntBASIC2.25□□□□□ -2.05
LSM1O15116 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC2.25□□□□□ -2.05
LSM1O15116 MTND1P16-201ENST00000465177 898 ntBASIC2.25□□□□□ -2.05
LSM1O15116 DYNLL1P5-201ENST00000467158 270 ntBASIC2.25□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 127.1 ms