Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 AC131280.1-202ENST00000624067 4211 ntBASIC3.19□□□□□ -1.9
CUX2O14529 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
CUX2O14529 MIR591-201ENST00000385290 95 ntBASIC3.18□□□□□ -1.9
CUX2O14529 MTATP6P27-201ENST00000416987 621 ntBASIC3.18□□□□□ -1.9
CUX2O14529 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC3.18□□□□□ -1.9
CUX2O14529 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.18□□□□□ -1.9
CUX2O14529 SNRPEP4-201ENST00000435815 279 ntBASIC3.18□□□□□ -1.9
CUX2O14529 MTND4P6-201ENST00000438297 472 ntBASIC3.18□□□□□ -1.9
CUX2O14529 AL121871.1-201ENST00000443413 436 ntBASIC3.18□□□□□ -1.9
CUX2O14529 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC3.18□□□□□ -1.9
CUX2O14529 SSXP4-201ENST00000451349 245 ntBASIC3.18□□□□□ -1.9
CUX2O14529 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC3.18□□□□□ -1.9
CUX2O14529 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC3.18□□□□□ -1.9
CUX2O14529 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC3.18□□□□□ -1.9
CUX2O14529 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CUX2O14529 AC012181.1-201ENST00000479895 423 ntBASIC3.18□□□□□ -1.9
CUX2O14529 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC3.18□□□□□ -1.9
CUX2O14529 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC3.18□□□□□ -1.9
CUX2O14529 AC105914.1-201ENST00000511798 226 ntBASIC3.18□□□□□ -1.9
CUX2O14529 AC022861.1-201ENST00000522981 663 ntBASIC3.18□□□□□ -1.9
CUX2O14529 AC021451.1-201ENST00000523498 1129 ntBASIC3.18□□□□□ -1.9
CUX2O14529 HSPA8P13-201ENST00000523715 472 ntBASIC3.18□□□□□ -1.9
CUX2O14529 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC3.18□□□□□ -1.9
CUX2O14529 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC3.18□□□□□ -1.9
CUX2O14529 AC245036.5-201ENST00000596330 847 ntBASIC3.18□□□□□ -1.9
CUX2O14529 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC3.18□□□□□ -1.9
CUX2O14529 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
CUX2O14529 AC084824.4-201ENST00000620106 731 ntBASIC3.18□□□□□ -1.9
CUX2O14529 AL356585.4-201ENST00000623078 1229 ntBASIC3.18□□□□□ -1.9
CUX2O14529 AP002907.1-201ENST00000606361 1430 ntBASIC3.18□□□□□ -1.9
CUX2O14529 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC3.18□□□□□ -1.9
CUX2O14529 MTND4P9-201ENST00000507819 1346 ntBASIC3.18□□□□□ -1.9
CUX2O14529 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC3.18□□□□□ -1.9
CUX2O14529 RNU5E-10P-201ENST00000363506 118 ntBASIC3.17□□□□□ -1.9
CUX2O14529 AL356131.1-201ENST00000405826 414 ntBASIC3.17□□□□□ -1.9
CUX2O14529 RPL7P30-201ENST00000420888 709 ntBASIC3.17□□□□□ -1.9
CUX2O14529 BEND7P1-201ENST00000422058 457 ntBASIC3.17□□□□□ -1.9
CUX2O14529 AC019178.2-201ENST00000423595 505 ntBASIC3.17□□□□□ -1.9
CUX2O14529 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC3.17□□□□□ -1.9
CUX2O14529 AC079780.1-201ENST00000428259 207 ntBASIC3.17□□□□□ -1.9
CUX2O14529 MTCO1P53-201ENST00000441633 699 ntBASIC3.17□□□□□ -1.9
CUX2O14529 AC244505.5-201ENST00000443639 207 ntBASIC3.17□□□□□ -1.9
CUX2O14529 AL358794.1-201ENST00000445689 381 ntBASIC3.17□□□□□ -1.9
CUX2O14529 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC3.17□□□□□ -1.9
CUX2O14529 AC005297.2-201ENST00000450430 606 ntBASIC3.17□□□□□ -1.9
CUX2O14529 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC3.17□□□□□ -1.9
CUX2O14529 RPL21P131-201ENST00000497298 483 ntBASIC3.17□□□□□ -1.9
CUX2O14529 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC3.17□□□□□ -1.9
CUX2O14529 AC005832.3-201ENST00000537929 631 ntBASIC3.17□□□□□ -1.9
CUX2O14529 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC3.17□□□□□ -1.9
CUX2O14529 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC3.17□□□□□ -1.9
CUX2O14529 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CUX2O14529 MTCYBP23-201ENST00000558717 1102 ntBASIC3.17□□□□□ -1.9
CUX2O14529 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC3.17□□□□□ -1.9
CUX2O14529 MIR4509-3-201ENST00000578671 94 ntBASIC3.17□□□□□ -1.9
CUX2O14529 MIR4509-2-201ENST00000583920 94 ntBASIC3.17□□□□□ -1.9
CUX2O14529 AC068790.3-201ENST00000602988 553 ntBASIC3.17□□□□□ -1.9
CUX2O14529 AC106900.2-201ENST00000604994 317 ntBASIC3.17□□□□□ -1.9
CUX2O14529 AC034102.8-201ENST00000615146 484 ntBASIC3.17□□□□□ -1.9
CUX2O14529 MIR4509-1-201ENST00000618224 94 ntBASIC3.17□□□□□ -1.9
CUX2O14529 MIR1322-201ENST00000638013 71 ntBASIC3.17□□□□□ -1.9
CUX2O14529 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CUX2O14529 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC3.17□□□□□ -1.9
CUX2O14529 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.16□□□□□ -1.9
CUX2O14529 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CUX2O14529 RBBP8P1-201ENST00000449447 1844 ntBASIC3.16□□□□□ -1.9
CUX2O14529 RNU6-53P-201ENST00000365367 106 ntBASIC3.16□□□□□ -1.9
CUX2O14529 SNORA40.2-201ENST00000390847 128 ntBASIC3.16□□□□□ -1.9
CUX2O14529 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC3.16□□□□□ -1.9
CUX2O14529 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC3.16□□□□□ -1.9
CUX2O14529 MTND2P5-201ENST00000432656 1006 ntBASIC3.16□□□□□ -1.9
CUX2O14529 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC3.16□□□□□ -1.9
CUX2O14529 PTGES3P5-201ENST00000455109 434 ntBASIC3.16□□□□□ -1.9
CUX2O14529 FCF1P6-201ENST00000456841 595 ntBASIC3.16□□□□□ -1.9
CUX2O14529 AC026410.2-201ENST00000460281 156 ntBASIC3.16□□□□□ -1.9
CUX2O14529 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC3.16□□□□□ -1.9
CUX2O14529 RPS26P21-201ENST00000475397 348 ntBASIC3.16□□□□□ -1.9
CUX2O14529 RNU6-583P-201ENST00000516012 92 ntBASIC3.16□□□□□ -1.9
CUX2O14529 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC3.16□□□□□ -1.9
CUX2O14529 SETP7-201ENST00000552169 453 ntBASIC3.16□□□□□ -1.9
CUX2O14529 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC3.16□□□□□ -1.9
CUX2O14529 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC3.16□□□□□ -1.9
CUX2O14529 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC3.16□□□□□ -1.9
CUX2O14529 AC069431.2-201ENST00000604149 1099 ntBASIC3.16□□□□□ -1.9
CUX2O14529 AC069304.2-201ENST00000605154 435 ntBASIC3.16□□□□□ -1.9
CUX2O14529 AL356473.1-201ENST00000406203 1408 ntBASIC3.16□□□□□ -1.9
CUX2O14529 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
CUX2O14529 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
CUX2O14529 RNU5D-1-201ENST00000363299 116 ntBASIC3.16□□□□□ -1.9
CUX2O14529 RNU6-560P-201ENST00000364007 108 ntBASIC3.16□□□□□ -1.9
CUX2O14529 RNA5SP338-201ENST00000410495 85 ntBASIC3.16□□□□□ -1.9
CUX2O14529 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CUX2O14529 USP9YP27-201ENST00000418455 438 ntBASIC3.16□□□□□ -1.9
CUX2O14529 MTCO2P5-201ENST00000422621 426 ntBASIC3.16□□□□□ -1.9
CUX2O14529 AC007327.1-201ENST00000447461 264 ntBASIC3.16□□□□□ -1.9
CUX2O14529 AC023424.2-201ENST00000493479 777 ntBASIC3.16□□□□□ -1.9
CUX2O14529 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.16□□□□□ -1.9
CUX2O14529 SNORA31.26-201ENST00000517250 137 ntBASIC3.16□□□□□ -1.9
CUX2O14529 ERHP1-201ENST00000523006 310 ntBASIC3.16□□□□□ -1.9
CUX2O14529 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 122.1 ms