Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC3.67□□□□□ -1.82
VPS4AQ9UN37 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.67□□□□□ -1.82
VPS4AQ9UN37 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
VPS4AQ9UN37 SNORA72.1-201ENST00000363485 129 ntBASIC3.67□□□□□ -1.82
VPS4AQ9UN37 RNU6-61P-201ENST00000365528 109 ntBASIC3.67□□□□□ -1.82
VPS4AQ9UN37 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
VPS4AQ9UN37 SNORA24.1-201ENST00000384401 135 ntBASIC3.67□□□□□ -1.82
VPS4AQ9UN37 RNU6-14P-201ENST00000384630 106 ntBASIC3.67□□□□□ -1.82
VPS4AQ9UN37 SOD2P1-201ENST00000396543 562 ntBASIC3.67□□□□□ -1.82
VPS4AQ9UN37 OR9R1P-201ENST00000412200 877 ntBASIC3.67□□□□□ -1.82
VPS4AQ9UN37 SRIP2-201ENST00000428470 166 ntBASIC3.67□□□□□ -1.82
VPS4AQ9UN37 RPL36AP53-201ENST00000432891 316 ntBASIC3.67□□□□□ -1.82
VPS4AQ9UN37 AC024082.2-201ENST00000434771 238 ntBASIC3.67□□□□□ -1.82
VPS4AQ9UN37 AL121601.2-201ENST00000438019 707 ntBASIC3.67□□□□□ -1.82
VPS4AQ9UN37 MTND4P25-201ENST00000441039 533 ntBASIC3.67□□□□□ -1.82
VPS4AQ9UN37 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC3.67□□□□□ -1.82
VPS4AQ9UN37 PRDX3P3-201ENST00000447765 522 ntBASIC3.67□□□□□ -1.82
VPS4AQ9UN37 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS4AQ9UN37 RN7SL93P-201ENST00000463035 293 ntBASIC3.67□□□□□ -1.82
VPS4AQ9UN37 RPL23AP62-201ENST00000463396 453 ntBASIC3.67□□□□□ -1.82
VPS4AQ9UN37 AC010285.1-201ENST00000470580 392 ntBASIC3.67□□□□□ -1.82
VPS4AQ9UN37 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS4AQ9UN37 KLHL2P1-201ENST00000508691 521 ntBASIC3.67□□□□□ -1.82
VPS4AQ9UN37 AC098591.2-201ENST00000510152 315 ntBASIC3.67□□□□□ -1.82
VPS4AQ9UN37 AC087369.1-201ENST00000520775 996 ntBASIC3.67□□□□□ -1.82
VPS4AQ9UN37 AP006587.4-201ENST00000526053 529 ntBASIC3.67□□□□□ -1.82
VPS4AQ9UN37 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC3.67□□□□□ -1.82
VPS4AQ9UN37 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC3.67□□□□□ -1.82
VPS4AQ9UN37 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.67□□□□□ -1.82
VPS4AQ9UN37 HIF1AP1-201ENST00000553642 175 ntBASIC3.67□□□□□ -1.82
VPS4AQ9UN37 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS4AQ9UN37 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.67□□□□□ -1.82
VPS4AQ9UN37 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.67□□□□□ -1.82
VPS4AQ9UN37 ZNF192P1-203ENST00000565888 810 ntBASIC3.67□□□□□ -1.82
VPS4AQ9UN37 MIR5195-201ENST00000583555 115 ntBASIC3.67□□□□□ -1.82
VPS4AQ9UN37 SNORD84-203ENST00000584275 78 ntBASIC3.67□□□□□ -1.82
VPS4AQ9UN37 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC3.67□□□□□ -1.82
VPS4AQ9UN37 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS4AQ9UN37 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC3.67□□□□□ -1.82
VPS4AQ9UN37 BRDTP1-201ENST00000605735 677 ntBASIC3.67□□□□□ -1.82
VPS4AQ9UN37 uc_338.11-201ENST00000619132 160 ntBASIC3.67□□□□□ -1.82
VPS4AQ9UN37 AC011155.2-201ENST00000623202 216 ntBASIC3.67□□□□□ -1.82
VPS4AQ9UN37 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.67□□□□□ -1.82
VPS4AQ9UN37 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.67□□□□□ -1.82
VPS4AQ9UN37 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
VPS4AQ9UN37 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
VPS4AQ9UN37 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.67□□□□□ -1.82
VPS4AQ9UN37 SDAD1P2-201ENST00000441308 2028 ntBASIC3.66□□□□□ -1.82
VPS4AQ9UN37 AC116096.1-201ENST00000566804 2314 ntBASIC3.66□□□□□ -1.82
VPS4AQ9UN37 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
VPS4AQ9UN37 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
VPS4AQ9UN37 RNU1-18P-201ENST00000363062 164 ntBASIC3.66□□□□□ -1.82
VPS4AQ9UN37 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
VPS4AQ9UN37 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.66□□□□□ -1.82
VPS4AQ9UN37 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
VPS4AQ9UN37 RNU6-641P-201ENST00000384006 107 ntBASIC3.66□□□□□ -1.82
VPS4AQ9UN37 RPL21P17-201ENST00000397467 475 ntBASIC3.66□□□□□ -1.82
VPS4AQ9UN37 HSPE1P8-201ENST00000406997 288 ntBASIC3.66□□□□□ -1.82
VPS4AQ9UN37 RNU6-1068P-201ENST00000410958 103 ntBASIC3.66□□□□□ -1.82
VPS4AQ9UN37 AL139247.1-201ENST00000422768 325 ntBASIC3.66□□□□□ -1.82
VPS4AQ9UN37 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC3.66□□□□□ -1.82
VPS4AQ9UN37 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS4AQ9UN37 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS4AQ9UN37 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
VPS4AQ9UN37 AC020550.1-201ENST00000447385 163 ntBASIC3.66□□□□□ -1.82
VPS4AQ9UN37 MTND5P20-201ENST00000448677 143 ntBASIC3.66□□□□□ -1.82
VPS4AQ9UN37 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
VPS4AQ9UN37 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.66□□□□□ -1.82
VPS4AQ9UN37 TRBV12-2-201ENST00000489763 344 ntBASIC3.66□□□□□ -1.82
VPS4AQ9UN37 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS4AQ9UN37 RPL38P4-201ENST00000502376 214 ntBASIC3.66□□□□□ -1.82
VPS4AQ9UN37 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS4AQ9UN37 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.66□□□□□ -1.82
VPS4AQ9UN37 AC092436.1-201ENST00000506450 503 ntBASIC3.66□□□□□ -1.82
VPS4AQ9UN37 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.66□□□□□ -1.82
VPS4AQ9UN37 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
VPS4AQ9UN37 SUMO2P20-201ENST00000520803 283 ntBASIC3.66□□□□□ -1.82
VPS4AQ9UN37 SUB1P1-201ENST00000524415 382 ntBASIC3.66□□□□□ -1.82
VPS4AQ9UN37 AC109635.4-202ENST00000531666 412 ntBASIC3.66□□□□□ -1.82
VPS4AQ9UN37 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS4AQ9UN37 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC3.66□□□□□ -1.82
VPS4AQ9UN37 FAM60BP-201ENST00000578364 658 ntBASIC3.66□□□□□ -1.82
VPS4AQ9UN37 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.66□□□□□ -1.82
VPS4AQ9UN37 AC174048.1-201ENST00000603389 144 ntBASIC3.66□□□□□ -1.82
VPS4AQ9UN37 LARP7P1-201ENST00000605576 316 ntBASIC3.66□□□□□ -1.82
VPS4AQ9UN37 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.66□□□□□ -1.82
VPS4AQ9UN37 FP236240.3-201ENST00000623061 327 ntBASIC3.66□□□□□ -1.82
VPS4AQ9UN37 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.66□□□□□ -1.82
VPS4AQ9UN37 AC103710.2-202ENST00000641454 2853 ntBASIC3.66□□□□□ -1.82
VPS4AQ9UN37 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
VPS4AQ9UN37 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
VPS4AQ9UN37 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.65□□□□□ -1.82
VPS4AQ9UN37 RIOK3P1-201ENST00000418778 1528 ntBASIC3.65□□□□□ -1.82
VPS4AQ9UN37 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
VPS4AQ9UN37 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC3.65□□□□□ -1.82
VPS4AQ9UN37 SNORA62.1-201ENST00000364287 154 ntBASIC3.65□□□□□ -1.83
VPS4AQ9UN37 SNORA51.2-201ENST00000364595 132 ntBASIC3.65□□□□□ -1.83
VPS4AQ9UN37 Y_RNA.279-201ENST00000364763 95 ntBASIC3.65□□□□□ -1.83
VPS4AQ9UN37 SNORD115-7-201ENST00000365306 82 ntBASIC3.65□□□□□ -1.83
VPS4AQ9UN37 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 174.3 ms