Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 HMGB1P41-201ENST00000520234 440 ntBASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 MGST1-215ENST00000540056 546 ntTSL 3 BASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 AC024909.2-201ENST00000553035 286 ntBASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 HMGB1P14-201ENST00000557424 591 ntBASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 AMZ2P1-203ENST00000565833 850 ntBASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 MIR3167-201ENST00000579623 85 ntBASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 AP002360.4-201ENST00000606980 481 ntBASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 AC092656.1-203ENST00000624134 423 ntBASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 PSMD5-AS1-215ENST00000640622 205 ntBASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 SNORA51.4-201ENST00000364993 124 ntBASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 SMIM11P1-201ENST00000369586 178 ntBASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 SNORD15B-201ENST00000384714 146 ntBASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 SNORD116-4-201ENST00000384733 96 ntBASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 NDUFB4P5-201ENST00000415445 361 ntBASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 MTND3P17-201ENST00000416968 344 ntBASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 AC092047.1-201ENST00000424997 240 ntBASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 AC093106.2-201ENST00000428212 385 ntBASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 AC097713.2-201ENST00000430199 356 ntBASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 MTCO2P7-201ENST00000446518 666 ntBASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 RPL7P5-201ENST00000471472 736 ntBASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 AP004217.1-201ENST00000480579 346 ntBASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 AL160314.1-201ENST00000490836 438 ntBASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 RNU6-430P-201ENST00000517078 107 ntBASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 AC011611.1-201ENST00000552179 197 ntBASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 NCAPGP2-201ENST00000557911 754 ntBASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 HMGB1P6-201ENST00000569046 646 ntBASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 AC005951.1-201ENST00000576706 485 ntBASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 AC103987.3-201ENST00000582071 292 ntBASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 GLUD1P4-201ENST00000590914 418 ntBASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 AC007363.1-201ENST00000604736 620 ntBASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 AL161734.1-201ENST00000609720 557 ntBASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 MIR622-201ENST00000638396 96 ntBASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 AL137003.2-201ENST00000606924 2538 ntBASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 FAM35BP-202ENST00000497389 3337 ntBASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
LIMA1Q9UHB6 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
LIMA1Q9UHB6 RNU6-960P-201ENST00000364056 120 ntBASIC3.34□□□□□ -1.87
LIMA1Q9UHB6 RNU6-188P-201ENST00000364207 107 ntBASIC3.34□□□□□ -1.87
LIMA1Q9UHB6 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
LIMA1Q9UHB6 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.87
LIMA1Q9UHB6 RNU6-1119P-201ENST00000384349 108 ntBASIC3.34□□□□□ -1.87
LIMA1Q9UHB6 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.34□□□□□ -1.87
LIMA1Q9UHB6 AL139397.2-201ENST00000404529 772 ntBASIC3.34□□□□□ -1.87
LIMA1Q9UHB6 BX295541.1-201ENST00000417774 250 ntBASIC3.34□□□□□ -1.87
LIMA1Q9UHB6 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.34□□□□□ -1.87
LIMA1Q9UHB6 HMGB1P27-201ENST00000431429 603 ntBASIC3.34□□□□□ -1.87
LIMA1Q9UHB6 AL159987.2-201ENST00000432754 307 ntBASIC3.34□□□□□ -1.87
LIMA1Q9UHB6 RPL21P41-201ENST00000459863 264 ntBASIC3.34□□□□□ -1.87
LIMA1Q9UHB6 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC3.34□□□□□ -1.87
LIMA1Q9UHB6 AC109925.1-201ENST00000478069 331 ntBASIC3.34□□□□□ -1.87
LIMA1Q9UHB6 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC3.34□□□□□ -1.87
LIMA1Q9UHB6 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC3.34□□□□□ -1.87
LIMA1Q9UHB6 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC3.34□□□□□ -1.87
LIMA1Q9UHB6 RNU6-928P-201ENST00000516876 104 ntBASIC3.34□□□□□ -1.87
LIMA1Q9UHB6 AP000867.2-201ENST00000532468 320 ntBASIC3.34□□□□□ -1.87
LIMA1Q9UHB6 AC087883.1-201ENST00000551882 391 ntBASIC3.34□□□□□ -1.87
LIMA1Q9UHB6 AC245014.2-201ENST00000603689 287 ntBASIC3.34□□□□□ -1.87
LIMA1Q9UHB6 AC246785.4-201ENST00000605374 287 ntBASIC3.34□□□□□ -1.87
LIMA1Q9UHB6 AC008498.1-201ENST00000613012 531 ntBASIC3.34□□□□□ -1.87
LIMA1Q9UHB6 AC034102.8-201ENST00000615146 484 ntBASIC3.34□□□□□ -1.87
LIMA1Q9UHB6 AC072046.2-201ENST00000618366 268 ntBASIC3.34□□□□□ -1.87
LIMA1Q9UHB6 AC007318.2-201ENST00000620999 243 ntBASIC3.34□□□□□ -1.87
LIMA1Q9UHB6 AC018692.3-201ENST00000623929 123 ntBASIC3.34□□□□□ -1.87
LIMA1Q9UHB6 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
LIMA1Q9UHB6 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.87
LIMA1Q9UHB6 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
LIMA1Q9UHB6 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.34□□□□□ -1.88
LIMA1Q9UHB6 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.34□□□□□ -1.88
LIMA1Q9UHB6 AC022336.2-201ENST00000568966 2538 ntBASIC3.34□□□□□ -1.88
LIMA1Q9UHB6 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.34□□□□□ -1.88
LIMA1Q9UHB6 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms