Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC3.91□□□□□ -1.78
CHMP4AQ9BY43 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CHMP4AQ9BY43 VTRNA1-1-201ENST00000363120 99 ntBASIC3.91□□□□□ -1.78
CHMP4AQ9BY43 RNU6-525P-201ENST00000363685 104 ntBASIC3.91□□□□□ -1.78
CHMP4AQ9BY43 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
CHMP4AQ9BY43 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC3.91□□□□□ -1.78
CHMP4AQ9BY43 RPA3-203ENST00000401447 414 ntTSL 3 BASIC3.91□□□□□ -1.78
CHMP4AQ9BY43 MTND4P13-201ENST00000402078 1023 ntBASIC3.91□□□□□ -1.78
CHMP4AQ9BY43 SKA2P1-201ENST00000425592 390 ntBASIC3.91□□□□□ -1.78
CHMP4AQ9BY43 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC3.91□□□□□ -1.78
CHMP4AQ9BY43 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC3.91□□□□□ -1.78
CHMP4AQ9BY43 AC104389.3-201ENST00000445629 235 ntBASIC3.91□□□□□ -1.78
CHMP4AQ9BY43 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3.91□□□□□ -1.78
CHMP4AQ9BY43 HMGN2P10-201ENST00000448085 265 ntBASIC3.91□□□□□ -1.78
CHMP4AQ9BY43 NIPA2P5-201ENST00000452282 464 ntBASIC3.91□□□□□ -1.78
CHMP4AQ9BY43 AC011825.1-201ENST00000484967 388 ntBASIC3.91□□□□□ -1.78
CHMP4AQ9BY43 RN7SL283P-201ENST00000489055 303 ntBASIC3.91□□□□□ -1.78
CHMP4AQ9BY43 RPS29P20-201ENST00000489592 171 ntBASIC3.91□□□□□ -1.78
CHMP4AQ9BY43 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.91□□□□□ -1.78
CHMP4AQ9BY43 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC3.91□□□□□ -1.78
CHMP4AQ9BY43 OR5BN1P-201ENST00000532955 829 ntBASIC3.91□□□□□ -1.78
CHMP4AQ9BY43 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC3.91□□□□□ -1.78
CHMP4AQ9BY43 AC090616.3-201ENST00000582184 217 ntBASIC3.91□□□□□ -1.78
CHMP4AQ9BY43 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.91□□□□□ -1.78
CHMP4AQ9BY43 AC008507.1-201ENST00000587506 734 ntBASIC3.91□□□□□ -1.78
CHMP4AQ9BY43 AL607023.1-201ENST00000620045 248 ntBASIC3.91□□□□□ -1.78
CHMP4AQ9BY43 AC096644.4-201ENST00000563417 2912 ntBASIC3.91□□□□□ -1.78
CHMP4AQ9BY43 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC3.9□□□□□ -1.78
CHMP4AQ9BY43 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
CHMP4AQ9BY43 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.78
CHMP4AQ9BY43 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC3.9□□□□□ -1.79
CHMP4AQ9BY43 MTND2P9-201ENST00000422293 931 ntBASIC3.9□□□□□ -1.79
CHMP4AQ9BY43 AC093151.1-201ENST00000427711 313 ntBASIC3.9□□□□□ -1.79
CHMP4AQ9BY43 RPL23AP22-201ENST00000437556 453 ntBASIC3.9□□□□□ -1.79
CHMP4AQ9BY43 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.9□□□□□ -1.79
CHMP4AQ9BY43 COX6CP12-201ENST00000446748 202 ntBASIC3.9□□□□□ -1.79
CHMP4AQ9BY43 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC3.9□□□□□ -1.79
CHMP4AQ9BY43 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC3.9□□□□□ -1.79
CHMP4AQ9BY43 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC3.9□□□□□ -1.79
CHMP4AQ9BY43 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC3.9□□□□□ -1.79
CHMP4AQ9BY43 SCARNA17.1-201ENST00000516211 143 ntBASIC3.9□□□□□ -1.79
CHMP4AQ9BY43 RNU1-143P-201ENST00000516296 146 ntBASIC3.9□□□□□ -1.79
CHMP4AQ9BY43 SCARNA17.2-201ENST00000516334 143 ntBASIC3.9□□□□□ -1.79
CHMP4AQ9BY43 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC3.9□□□□□ -1.79
CHMP4AQ9BY43 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC3.9□□□□□ -1.79
CHMP4AQ9BY43 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC3.9□□□□□ -1.79
CHMP4AQ9BY43 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC3.9□□□□□ -1.79
CHMP4AQ9BY43 AC138761.3-201ENST00000579993 334 ntBASIC3.9□□□□□ -1.79
CHMP4AQ9BY43 MIR3146-201ENST00000580367 79 ntBASIC3.9□□□□□ -1.79
CHMP4AQ9BY43 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC3.9□□□□□ -1.79
CHMP4AQ9BY43 AC121334.2-201ENST00000605387 271 ntBASIC3.9□□□□□ -1.79
CHMP4AQ9BY43 U1.23-201ENST00000610293 146 ntBASIC3.9□□□□□ -1.79
CHMP4AQ9BY43 AC092106.3-201ENST00000611308 722 ntBASIC3.9□□□□□ -1.79
CHMP4AQ9BY43 AC100793.4-201ENST00000613683 429 ntBASIC3.9□□□□□ -1.79
CHMP4AQ9BY43 SCARNA17.4-201ENST00000614296 143 ntBASIC3.9□□□□□ -1.79
CHMP4AQ9BY43 RNU1-68P-201ENST00000615382 146 ntBASIC3.9□□□□□ -1.79
CHMP4AQ9BY43 U1.39-201ENST00000621562 146 ntBASIC3.9□□□□□ -1.79
CHMP4AQ9BY43 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.79
CHMP4AQ9BY43 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CHMP4AQ9BY43 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
CHMP4AQ9BY43 SNORD56.3-201ENST00000363507 71 ntBASIC3.89□□□□□ -1.79
CHMP4AQ9BY43 MIR301A-201ENST00000385261 86 ntBASIC3.89□□□□□ -1.79
CHMP4AQ9BY43 UBA52P6-201ENST00000399822 382 ntBASIC3.89□□□□□ -1.79
CHMP4AQ9BY43 Z92545.1-201ENST00000411782 234 ntBASIC3.89□□□□□ -1.79
CHMP4AQ9BY43 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.89□□□□□ -1.79
CHMP4AQ9BY43 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.89□□□□□ -1.79
CHMP4AQ9BY43 RPL39P36-201ENST00000490784 156 ntBASIC3.89□□□□□ -1.79
CHMP4AQ9BY43 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
CHMP4AQ9BY43 AC098799.2-201ENST00000509466 868 ntBASIC3.89□□□□□ -1.79
CHMP4AQ9BY43 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
CHMP4AQ9BY43 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.89□□□□□ -1.79
CHMP4AQ9BY43 RNA5SP471-201ENST00000516971 106 ntBASIC3.89□□□□□ -1.79
CHMP4AQ9BY43 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC3.89□□□□□ -1.79
CHMP4AQ9BY43 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC3.89□□□□□ -1.79
CHMP4AQ9BY43 AP003461.1-201ENST00000528866 78 ntBASIC3.89□□□□□ -1.79
CHMP4AQ9BY43 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC3.89□□□□□ -1.79
CHMP4AQ9BY43 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC3.89□□□□□ -1.79
CHMP4AQ9BY43 AC021739.1-201ENST00000559631 174 ntBASIC3.89□□□□□ -1.79
CHMP4AQ9BY43 AC023824.2-201ENST00000566185 400 ntBASIC3.89□□□□□ -1.79
CHMP4AQ9BY43 RPL12P50-201ENST00000603116 116 ntBASIC3.89□□□□□ -1.79
CHMP4AQ9BY43 DPPA3P3-201ENST00000603842 430 ntBASIC3.89□□□□□ -1.79
CHMP4AQ9BY43 AC104763.2-201ENST00000604179 382 ntBASIC3.89□□□□□ -1.79
CHMP4AQ9BY43 AC068057.2-201ENST00000624047 895 ntBASIC3.89□□□□□ -1.79
CHMP4AQ9BY43 AC007490.1-201ENST00000624321 703 ntBASIC3.89□□□□□ -1.79
CHMP4AQ9BY43 AC004944.1-201ENST00000517807 3059 ntBASIC3.89□□□□□ -1.79
CHMP4AQ9BY43 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC3.89□□□□□ -1.79
CHMP4AQ9BY43 RPL35AP12-201ENST00000425362 338 ntBASIC3.88□□□□□ -1.79
CHMP4AQ9BY43 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.88□□□□□ -1.79
CHMP4AQ9BY43 RPL37P21-201ENST00000435890 276 ntBASIC3.88□□□□□ -1.79
CHMP4AQ9BY43 NEFMP1-201ENST00000443423 1006 ntBASIC3.88□□□□□ -1.79
CHMP4AQ9BY43 COX6CP2-201ENST00000444980 225 ntBASIC3.88□□□□□ -1.79
CHMP4AQ9BY43 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.88□□□□□ -1.79
CHMP4AQ9BY43 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC3.88□□□□□ -1.79
CHMP4AQ9BY43 AC080013.2-201ENST00000460866 323 ntBASIC3.88□□□□□ -1.79
CHMP4AQ9BY43 RBM43P1-201ENST00000476891 1081 ntBASIC3.88□□□□□ -1.79
CHMP4AQ9BY43 GZMAP1-201ENST00000503054 631 ntBASIC3.88□□□□□ -1.79
CHMP4AQ9BY43 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.88□□□□□ -1.79
CHMP4AQ9BY43 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC3.88□□□□□ -1.79
CHMP4AQ9BY43 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC3.88□□□□□ -1.79
CHMP4AQ9BY43 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC3.88□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms