Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
HLA-CQ95604 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC5.52□□□□□ -1.53
HLA-CQ95604 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
HLA-CQ95604 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
HLA-CQ95604 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
HLA-CQ95604 RNA5SP428-201ENST00000365129 132 ntBASIC5.52□□□□□ -1.53
HLA-CQ95604 RNU6-449P-201ENST00000383914 107 ntBASIC5.52□□□□□ -1.53
HLA-CQ95604 SNORD116-18-201ENST00000383961 92 ntBASIC5.52□□□□□ -1.53
HLA-CQ95604 Y_RNA.446-201ENST00000384178 104 ntBASIC5.52□□□□□ -1.53
HLA-CQ95604 MIR32-201ENST00000384965 70 ntBASIC5.52□□□□□ -1.53
HLA-CQ95604 UBA52P6-201ENST00000399822 382 ntBASIC5.52□□□□□ -1.53
HLA-CQ95604 NDUFB4P7-201ENST00000423198 363 ntBASIC5.52□□□□□ -1.53
HLA-CQ95604 AC004975.1-201ENST00000428733 208 ntBASIC5.52□□□□□ -1.53
HLA-CQ95604 AC011742.1-201ENST00000431448 434 ntBASIC5.52□□□□□ -1.53
HLA-CQ95604 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC5.52□□□□□ -1.53
HLA-CQ95604 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC5.52□□□□□ -1.53
HLA-CQ95604 TDGF1P1-201ENST00000445734 527 ntBASIC5.52□□□□□ -1.53
HLA-CQ95604 ANP32BP2-201ENST00000454525 545 ntBASIC5.52□□□□□ -1.53
HLA-CQ95604 RPL31P13-201ENST00000484151 370 ntBASIC5.52□□□□□ -1.53
HLA-CQ95604 RN7SL604P-201ENST00000492589 296 ntBASIC5.52□□□□□ -1.53
HLA-CQ95604 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC5.52□□□□□ -1.53
HLA-CQ95604 RN7SKP67-201ENST00000515905 235 ntBASIC5.52□□□□□ -1.53
HLA-CQ95604 RN7SKP122-201ENST00000515923 296 ntBASIC5.52□□□□□ -1.53
HLA-CQ95604 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC5.52□□□□□ -1.53
HLA-CQ95604 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC5.52□□□□□ -1.53
HLA-CQ95604 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC5.52□□□□□ -1.53
HLA-CQ95604 AL391358.1-201ENST00000605342 190 ntBASIC5.52□□□□□ -1.53
HLA-CQ95604 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC5.52□□□□□ -1.53
HLA-CQ95604 AC068724.3-201ENST00000625906 87 ntBASIC5.52□□□□□ -1.53
HLA-CQ95604 MIR6830-201ENST00000636015 70 ntBASIC5.52□□□□□ -1.53
HLA-CQ95604 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
HLA-CQ95604 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC5.52□□□□□ -1.53
HLA-CQ95604 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
HLA-CQ95604 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
HLA-CQ95604 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
HLA-CQ95604 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC5.52□□□□□ -1.53
HLA-CQ95604 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC5.52□□□□□ -1.53
HLA-CQ95604 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC5.52□□□□□ -1.53
HLA-CQ95604 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC5.52□□□□□ -1.53
HLA-CQ95604 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
HLA-CQ95604 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC5.51□□□□□ -1.53
HLA-CQ95604 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
HLA-CQ95604 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
HLA-CQ95604 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
HLA-CQ95604 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.51□□□□□ -1.53
HLA-CQ95604 RNU6-312P-201ENST00000364629 107 ntBASIC5.51□□□□□ -1.53
HLA-CQ95604 RNU6-72P-201ENST00000384285 79 ntBASIC5.51□□□□□ -1.53
HLA-CQ95604 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
HLA-CQ95604 AC007568.1-201ENST00000422912 471 ntBASIC5.51□□□□□ -1.53
HLA-CQ95604 AC007560.1-201ENST00000426912 237 ntBASIC5.51□□□□□ -1.53
HLA-CQ95604 RPS5P7-201ENST00000456664 608 ntBASIC5.51□□□□□ -1.53
HLA-CQ95604 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC5.51□□□□□ -1.53
HLA-CQ95604 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
HLA-CQ95604 SNRPCP3-201ENST00000474888 476 ntBASIC5.51□□□□□ -1.53
HLA-CQ95604 RPL23AP49-201ENST00000492925 468 ntBASIC5.51□□□□□ -1.53
HLA-CQ95604 ENSA-210ENST00000503241 574 ntTSL 3 BASIC5.51□□□□□ -1.53
HLA-CQ95604 RNU6-567P-201ENST00000516746 107 ntBASIC5.51□□□□□ -1.53
HLA-CQ95604 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC5.51□□□□□ -1.53
HLA-CQ95604 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC5.51□□□□□ -1.53
HLA-CQ95604 AL356157.2-201ENST00000605122 111 ntBASIC5.51□□□□□ -1.53
HLA-CQ95604 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC5.51□□□□□ -1.53
HLA-CQ95604 CCT7-217ENST00000626868 249 ntTSL 5 BASIC5.51□□□□□ -1.53
HLA-CQ95604 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
HLA-CQ95604 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
HLA-CQ95604 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC5.51□□□□□ -1.53
HLA-CQ95604 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
HLA-CQ95604 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC5.51□□□□□ -1.53
HLA-CQ95604 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
HLA-CQ95604 AL353796.1-201ENST00000561542 3241 ntBASIC5.5□□□□□ -1.53
HLA-CQ95604 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC5.5□□□□□ -1.53
HLA-CQ95604 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
HLA-CQ95604 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
HLA-CQ95604 AL121839.2-201ENST00000565058 6943 ntBASIC5.5□□□□□ -1.53
HLA-CQ95604 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.5□□□□□ -1.53
HLA-CQ95604 AL360270.2-201ENST00000562952 5985 ntBASIC5.5□□□□□ -1.53
HLA-CQ95604 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC5.5□□□□□ -1.53
HLA-CQ95604 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
HLA-CQ95604 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
HLA-CQ95604 U3.3-201ENST00000362986 216 ntBASIC5.5□□□□□ -1.53
HLA-CQ95604 RNU6-626P-201ENST00000363354 107 ntBASIC5.5□□□□□ -1.53
HLA-CQ95604 Y_RNA.217-201ENST00000364214 105 ntBASIC5.5□□□□□ -1.53
HLA-CQ95604 MIR23B-201ENST00000384832 97 ntBASIC5.5□□□□□ -1.53
HLA-CQ95604 MIR1182-201ENST00000408363 97 ntBASIC5.5□□□□□ -1.53
HLA-CQ95604 Y_RNA.597-201ENST00000410463 100 ntBASIC5.5□□□□□ -1.53
HLA-CQ95604 RNU5E-9P-201ENST00000411164 104 ntBASIC5.5□□□□□ -1.53
HLA-CQ95604 AL138785.1-201ENST00000425821 331 ntBASIC5.5□□□□□ -1.53
HLA-CQ95604 AC098614.2-201ENST00000426040 255 ntBASIC5.5□□□□□ -1.53
HLA-CQ95604 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.5□□□□□ -1.53
HLA-CQ95604 AC008267.6-201ENST00000441664 139 ntBASIC5.5□□□□□ -1.53
HLA-CQ95604 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC5.5□□□□□ -1.53
HLA-CQ95604 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC5.5□□□□□ -1.53
HLA-CQ95604 Y_RNA.641-201ENST00000459414 105 ntBASIC5.5□□□□□ -1.53
HLA-CQ95604 AC140059.1-201ENST00000489238 361 ntBASIC5.5□□□□□ -1.53
HLA-CQ95604 COX6B1P5-201ENST00000509843 249 ntBASIC5.5□□□□□ -1.53
HLA-CQ95604 RNU6-572P-201ENST00000516724 80 ntBASIC5.5□□□□□ -1.53
HLA-CQ95604 RNU6-1198P-201ENST00000516904 67 ntBASIC5.5□□□□□ -1.53
HLA-CQ95604 RNA5SP291-201ENST00000517222 105 ntBASIC5.5□□□□□ -1.53
HLA-CQ95604 MAL2-206ENST00000522187 547 ntTSL 4 BASIC5.5□□□□□ -1.53
HLA-CQ95604 BPIFA4P-203ENST00000603168 689 ntBASIC5.5□□□□□ -1.53
HLA-CQ95604 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC5.5□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms