| ATG9A | Q7Z3C6 | TMEM232-201 | ENST00000455884 | 2501 nt | APPRIS P2 TSL 2 BASIC | 3.42 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | SYNE2-212 | ENST00000554584 | 20508 nt | TSL 5 BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | DDX10P1-201 | ENST00000448545 | 1933 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | RNU5A-8P-201 | ENST00000364102 | 114 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | EEF1E1-201 | ENST00000379715 | 1077 nt | APPRIS P1 TSL 1 (best) BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | RNU6-432P-201 | ENST00000384196 | 109 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | AL591034.1-201 | ENST00000407447 | 340 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | NT5C3A-205 | ENST00000409467 | 1032 nt | APPRIS ALT1 TSL 5 BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | RNU2-52P-201 | ENST00000410680 | 190 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | RNU2-62P-201 | ENST00000410868 | 191 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | AL451074.5-201 | ENST00000415894 | 435 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | AL139281.1-201 | ENST00000422120 | 335 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | NUP35P1-201 | ENST00000422734 | 947 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | AC005009.1-201 | ENST00000423979 | 269 nt | TSL 2 BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | AL512656.1-201 | ENST00000427492 | 401 nt | TSL 2 BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | AC137499.1-201 | ENST00000427602 | 88 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | PGBD4P3-201 | ENST00000440731 | 581 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | MTND6P13-201 | ENST00000443510 | 523 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | RAC1P7-201 | ENST00000445367 | 377 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | NRG3-AS1-201 | ENST00000448936 | 555 nt | TSL 2 BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | AL109933.2-201 | ENST00000452651 | 260 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | AL136164.1-201 | ENST00000456795 | 352 nt | TSL 3 BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | AC055855.1-201 | ENST00000489563 | 579 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | AC023794.1-201 | ENST00000504210 | 403 nt | TSL 2 BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | LINC01846-201 | ENST00000505908 | 651 nt | TSL 5 BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | MLLT10P2-201 | ENST00000506434 | 249 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | RNU4ATAC15P-201 | ENST00000516415 | 126 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | RNU6-405P-201 | ENST00000516637 | 110 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | AC090049.1-201 | ENST00000551075 | 1011 nt | TSL 3 BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | EGLN3-AS1-201 | ENST00000555922 | 308 nt | TSL 3 BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | TCF4-AS2-201 | ENST00000586467 | 445 nt | TSL 2 BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | UBE2L4-201 | ENST00000587688 | 464 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | AC068790.2-201 | ENST00000602601 | 557 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | DUXAP4-201 | ENST00000603046 | 613 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | XIAPP1-201 | ENST00000603162 | 600 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | AC007038.2-201 | ENST00000608095 | 740 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | CEP164P1-207 | ENST00000608660 | 504 nt | TSL 5 BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | AC010338.1-201 | ENST00000621823 | 717 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | AL158801.5-201 | ENST00000623123 | 465 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | PISRT1-201 | ENST00000626175 | 531 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | AL358154.1-201 | ENST00000627075 | 444 nt | TSL 3 BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | NEB-220 | ENST00000618972 | 26307 nt | APPRIS ALT2 TSL 5 BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | AC005832.2-201 | ENST00000538921 | 1430 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | MYOT-208 | ENST00000515645 | 1578 nt | TSL 2 BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | AL138713.1-201 | ENST00000624026 | 2130 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | OR51L1-203 | ENST00000641819 | 7300 nt | APPRIS P1 BASIC | 3.4 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | ZNF676-201 | ENST00000397121 | 2944 nt | APPRIS P1 TSL 2 BASIC | 3.4 | □□□□□ -1.86 | | |
| ATG9A | Q7Z3C6 | TXNDC8-203 | ENST00000374511 | 472 nt | APPRIS ALT2 TSL 5 BASIC | 3.4 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | RNU6-754P-201 | ENST00000391166 | 107 nt | BASIC | 3.4 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | RNA5SP21-201 | ENST00000410917 | 96 nt | BASIC | 3.4 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | AC078974.1-201 | ENST00000411597 | 223 nt | BASIC | 3.4 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | HSPE1P1-201 | ENST00000421494 | 318 nt | BASIC | 3.4 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | RPL7P46-201 | ENST00000425129 | 740 nt | BASIC | 3.4 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | AC112220.1-201 | ENST00000434628 | 355 nt | BASIC | 3.4 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | AL513043.1-201 | ENST00000439124 | 535 nt | BASIC | 3.4 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | AC244505.5-201 | ENST00000443639 | 207 nt | BASIC | 3.4 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | AC010285.1-201 | ENST00000470580 | 392 nt | BASIC | 3.4 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | AC117386.2-202 | ENST00000472821 | 522 nt | TSL 3 BASIC | 3.4 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | AC092104.1-201 | ENST00000497346 | 1441 nt | BASIC | 3.4 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | HMGB1P22-201 | ENST00000505315 | 124 nt | BASIC | 3.4 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | LYRM7-202 | ENST00000507584 | 317 nt | TSL 2 BASIC | 3.4 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | NDUFB4P2-201 | ENST00000509515 | 391 nt | BASIC | 3.4 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | NDST1-AS1-201 | ENST00000519040 | 368 nt | TSL 2 BASIC | 3.4 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | IGHVII-62-1-201 | ENST00000519283 | 235 nt | BASIC | 3.4 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | AC109466.1-211 | ENST00000519327 | 496 nt | TSL 3 BASIC | 3.4 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | MTCYBP20-201 | ENST00000524239 | 1129 nt | BASIC | 3.4 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | HPRT1P3-201 | ENST00000539521 | 576 nt | BASIC | 3.4 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | KC877982.1-201 | ENST00000602313 | 470 nt | BASIC | 3.4 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | AP001429.1-201 | ENST00000602568 | 530 nt | BASIC | 3.4 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | RPL12P50-201 | ENST00000603116 | 116 nt | BASIC | 3.4 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | NDUFA8P1-201 | ENST00000605525 | 367 nt | BASIC | 3.4 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | AL589743.7-201 | ENST00000612637 | 233 nt | BASIC | 3.4 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | AC093838.1-201 | ENST00000613014 | 469 nt | BASIC | 3.4 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | AC015540.1-201 | ENST00000615828 | 501 nt | BASIC | 3.4 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | AC068831.7-201 | ENST00000616954 | 363 nt | BASIC | 3.4 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | AC105265.4-201 | ENST00000618391 | 306 nt | TSL 5 BASIC | 3.4 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | AL359740.1-201 | ENST00000624340 | 592 nt | BASIC | 3.4 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | AC099654.13-201 | ENST00000639774 | 207 nt | BASIC | 3.4 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | SLC8A1-207 | ENST00000406785 | 20987 nt | TSL 1 (best) BASIC | 3.4 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | DOPEY1-203 | ENST00000369739 | 7743 nt | APPRIS ALT1 TSL 1 (best) BASIC | 3.4 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | NOC3L-201 | ENST00000371361 | 3455 nt | APPRIS P1 TSL 1 (best) BASIC | 3.39 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | PKHD1L1-201 | ENST00000378402 | 13076 nt | APPRIS P1 TSL 1 (best) BASIC | 3.39 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | AL390198.1-201 | ENST00000376445 | 320 nt | TSL 2 BASIC | 3.39 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | RNU5A-6P-201 | ENST00000384136 | 116 nt | BASIC | 3.39 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | MIR9-1-201 | ENST00000385198 | 89 nt | BASIC | 3.39 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | RNU6-882P-201 | ENST00000391025 | 103 nt | BASIC | 3.39 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | DEFB108C-201 | ENST00000400154 | 252 nt | BASIC | 3.39 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | AL356057.3-201 | ENST00000402607 | 340 nt | BASIC | 3.39 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | LHFPL3-AS1-203 | ENST00000417290 | 950 nt | TSL 1 (best) BASIC | 3.39 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | AC119618.1-201 | ENST00000434191 | 222 nt | BASIC | 3.39 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | SNRPEP4-201 | ENST00000435815 | 279 nt | BASIC | 3.39 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | ARPC3P1-201 | ENST00000437218 | 533 nt | BASIC | 3.39 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | AC004866.2-201 | ENST00000438285 | 481 nt | BASIC | 3.39 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | AL117336.1-201 | ENST00000439198 | 380 nt | TSL 2 BASIC | 3.39 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | MIR217HG-201 | ENST00000446139 | 900 nt | TSL 5 BASIC | 3.39 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | AC093392.2-201 | ENST00000450682 | 337 nt | BASIC | 3.39 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | SNORD109B-201 | ENST00000458961 | 67 nt | BASIC | 3.39 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | SNORD109A-201 | ENST00000459128 | 67 nt | BASIC | 3.39 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | KLF3P2-201 | ENST00000465138 | 268 nt | BASIC | 3.39 | □□□□□ -1.87 | | |
| ATG9A | Q7Z3C6 | MTCO2P29-201 | ENST00000465212 | 189 nt | BASIC | 3.39 | □□□□□ -1.87 | | |