Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 MTCO1P39-201ENST00000426148 480 ntBASIC4.1□□□□□ -1.75
VPS53Q5VIR6 AC079780.1-201ENST00000428259 207 ntBASIC4.1□□□□□ -1.75
VPS53Q5VIR6 YME1L1P1-201ENST00000429435 297 ntBASIC4.1□□□□□ -1.75
VPS53Q5VIR6 AC004866.2-201ENST00000438285 481 ntBASIC4.1□□□□□ -1.75
VPS53Q5VIR6 MTND4LP16-201ENST00000440828 295 ntBASIC4.1□□□□□ -1.75
VPS53Q5VIR6 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS53Q5VIR6 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC4.1□□□□□ -1.75
VPS53Q5VIR6 TPT1P14-201ENST00000448018 505 ntBASIC4.1□□□□□ -1.75
VPS53Q5VIR6 AC140076.1-201ENST00000449897 361 ntBASIC4.1□□□□□ -1.75
VPS53Q5VIR6 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC4.1□□□□□ -1.75
VPS53Q5VIR6 RNU7-59P-201ENST00000459101 61 ntBASIC4.1□□□□□ -1.75
VPS53Q5VIR6 SNORA40.12-201ENST00000516329 111 ntBASIC4.1□□□□□ -1.75
VPS53Q5VIR6 SCARNA24.1-201ENST00000516465 137 ntBASIC4.1□□□□□ -1.75
VPS53Q5VIR6 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS53Q5VIR6 AC103783.1-201ENST00000520506 373 ntBASIC4.1□□□□□ -1.75
VPS53Q5VIR6 AC011979.2-201ENST00000527568 352 ntBASIC4.1□□□□□ -1.75
VPS53Q5VIR6 SYF2P1-201ENST00000550658 413 ntBASIC4.1□□□□□ -1.75
VPS53Q5VIR6 FGF7P1-201ENST00000582820 288 ntBASIC4.1□□□□□ -1.75
VPS53Q5VIR6 AC098848.2-201ENST00000588023 330 ntBASIC4.1□□□□□ -1.75
VPS53Q5VIR6 IGKV1OR2-6-201ENST00000603485 277 ntBASIC4.1□□□□□ -1.75
VPS53Q5VIR6 AP001330.4-201ENST00000604350 154 ntBASIC4.1□□□□□ -1.75
VPS53Q5VIR6 AC104260.1-201ENST00000616660 539 ntBASIC4.1□□□□□ -1.75
VPS53Q5VIR6 YWHAEP7-203ENST00000622054 312 ntBASIC4.1□□□□□ -1.75
VPS53Q5VIR6 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
VPS53Q5VIR6 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC4.1□□□□□ -1.75
VPS53Q5VIR6 ZNF680P1-201ENST00000436625 1469 ntBASIC4.1□□□□□ -1.75
VPS53Q5VIR6 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
VPS53Q5VIR6 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
VPS53Q5VIR6 RNU6-74P-201ENST00000384235 107 ntBASIC4.09□□□□□ -1.75
VPS53Q5VIR6 RNU6-1158P-201ENST00000391167 107 ntBASIC4.09□□□□□ -1.75
VPS53Q5VIR6 AC068050.1-201ENST00000394891 380 ntBASIC4.09□□□□□ -1.75
VPS53Q5VIR6 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
VPS53Q5VIR6 Z99755.1-201ENST00000414048 380 ntBASIC4.09□□□□□ -1.75
VPS53Q5VIR6 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC4.09□□□□□ -1.75
VPS53Q5VIR6 GTF2IP20-201ENST00000431663 360 ntBASIC4.09□□□□□ -1.75
VPS53Q5VIR6 AL606489.2-201ENST00000433886 234 ntBASIC4.09□□□□□ -1.75
VPS53Q5VIR6 MTND4P25-201ENST00000441039 533 ntBASIC4.09□□□□□ -1.75
VPS53Q5VIR6 USP9YP8-201ENST00000441913 500 ntBASIC4.09□□□□□ -1.75
VPS53Q5VIR6 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC4.09□□□□□ -1.75
VPS53Q5VIR6 PRDX3P3-201ENST00000447765 522 ntBASIC4.09□□□□□ -1.75
VPS53Q5VIR6 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC4.09□□□□□ -1.75
VPS53Q5VIR6 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC4.09□□□□□ -1.75
VPS53Q5VIR6 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC4.09□□□□□ -1.75
VPS53Q5VIR6 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC4.09□□□□□ -1.75
VPS53Q5VIR6 AC008628.2-201ENST00000502605 298 ntBASIC4.09□□□□□ -1.75
VPS53Q5VIR6 AC018710.1-201ENST00000506509 158 ntBASIC4.09□□□□□ -1.75
VPS53Q5VIR6 HMGB3P15-201ENST00000507326 574 ntBASIC4.09□□□□□ -1.75
VPS53Q5VIR6 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC4.09□□□□□ -1.75
VPS53Q5VIR6 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC4.09□□□□□ -1.75
VPS53Q5VIR6 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC4.09□□□□□ -1.75
VPS53Q5VIR6 OR4R1P-201ENST00000529879 463 ntBASIC4.09□□□□□ -1.75
VPS53Q5VIR6 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC4.09□□□□□ -1.75
VPS53Q5VIR6 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC4.09□□□□□ -1.75
VPS53Q5VIR6 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC4.09□□□□□ -1.75
VPS53Q5VIR6 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC4.09□□□□□ -1.75
VPS53Q5VIR6 AC055876.1-202ENST00000567053 138 ntBASIC4.09□□□□□ -1.75
VPS53Q5VIR6 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC4.09□□□□□ -1.75
VPS53Q5VIR6 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC4.09□□□□□ -1.75
VPS53Q5VIR6 UBE2V2P2-201ENST00000587677 504 ntBASIC4.09□□□□□ -1.75
VPS53Q5VIR6 AP001029.3-201ENST00000588063 596 ntBASIC4.09□□□□□ -1.75
VPS53Q5VIR6 AC008739.3-201ENST00000603262 127 ntBASIC4.09□□□□□ -1.75
VPS53Q5VIR6 AL022099.1-201ENST00000604551 712 ntBASIC4.09□□□□□ -1.75
VPS53Q5VIR6 Z84480.1-201ENST00000605131 311 ntBASIC4.09□□□□□ -1.75
VPS53Q5VIR6 AC008945.2-201ENST00000606056 604 ntBASIC4.09□□□□□ -1.75
VPS53Q5VIR6 MIR7851-201ENST00000610611 160 ntBASIC4.09□□□□□ -1.75
VPS53Q5VIR6 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC4.09□□□□□ -1.75
VPS53Q5VIR6 MIR6075-201ENST00000620782 95 ntBASIC4.09□□□□□ -1.75
VPS53Q5VIR6 AC092628.2-201ENST00000622492 339 ntBASIC4.09□□□□□ -1.75
VPS53Q5VIR6 MTND4P12-201ENST00000498999 1377 ntBASIC4.09□□□□□ -1.75
VPS53Q5VIR6 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC4.09□□□□□ -1.76
VPS53Q5VIR6 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
VPS53Q5VIR6 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
VPS53Q5VIR6 PWAR6-201ENST00000552334 4618 ntBASIC4.08□□□□□ -1.76
VPS53Q5VIR6 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
VPS53Q5VIR6 RNU6-451P-201ENST00000362921 107 ntBASIC4.08□□□□□ -1.76
VPS53Q5VIR6 SNORD56.2-201ENST00000363242 71 ntBASIC4.08□□□□□ -1.76
VPS53Q5VIR6 Y_RNA.160-201ENST00000363677 92 ntBASIC4.08□□□□□ -1.76
VPS53Q5VIR6 U3.11-201ENST00000364476 212 ntBASIC4.08□□□□□ -1.76
VPS53Q5VIR6 RNU6-1078P-201ENST00000364522 103 ntBASIC4.08□□□□□ -1.76
VPS53Q5VIR6 AP000567.1-201ENST00000406413 156 ntBASIC4.08□□□□□ -1.76
VPS53Q5VIR6 AL356776.1-201ENST00000406574 447 ntBASIC4.08□□□□□ -1.76
VPS53Q5VIR6 MTCO1P12-201ENST00000414273 1543 ntBASIC4.08□□□□□ -1.76
VPS53Q5VIR6 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC4.08□□□□□ -1.76
VPS53Q5VIR6 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC4.08□□□□□ -1.76
VPS53Q5VIR6 MTND3P23-201ENST00000431980 347 ntBASIC4.08□□□□□ -1.76
VPS53Q5VIR6 RPL23AP30-201ENST00000432419 501 ntBASIC4.08□□□□□ -1.76
VPS53Q5VIR6 AC098614.3-201ENST00000438957 440 ntBASIC4.08□□□□□ -1.76
VPS53Q5VIR6 RPS15AP9-201ENST00000439856 381 ntBASIC4.08□□□□□ -1.76
VPS53Q5VIR6 AC016691.1-201ENST00000441321 413 ntBASIC4.08□□□□□ -1.76
VPS53Q5VIR6 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC4.08□□□□□ -1.76
VPS53Q5VIR6 SNRPGP6-201ENST00000451124 220 ntBASIC4.08□□□□□ -1.76
VPS53Q5VIR6 AL049714.1-201ENST00000466686 347 ntBASIC4.08□□□□□ -1.76
VPS53Q5VIR6 AC093663.1-201ENST00000497190 394 ntBASIC4.08□□□□□ -1.76
VPS53Q5VIR6 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC4.08□□□□□ -1.76
VPS53Q5VIR6 NAF1-205ENST00000509434 385 ntTSL 3 BASIC4.08□□□□□ -1.76
VPS53Q5VIR6 AC025465.4-201ENST00000513422 638 ntBASIC4.08□□□□□ -1.76
VPS53Q5VIR6 RNU1-61P-201ENST00000516107 151 ntBASIC4.08□□□□□ -1.76
VPS53Q5VIR6 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC4.08□□□□□ -1.76
VPS53Q5VIR6 AP000857.1-201ENST00000532151 543 ntBASIC4.08□□□□□ -1.76
VPS53Q5VIR6 AC034105.3-201ENST00000565294 442 ntBASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 110.2 ms