Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 MIR325-201ENST00000385260 98 ntBASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 AL359634.1-202ENST00000404721 284 ntBASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 NDUFS5P1-201ENST00000405668 289 ntBASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 AC137499.1-201ENST00000427602 88 ntBASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 USP12PX-201ENST00000432383 1057 ntBASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 RPL32P28-201ENST00000443577 397 ntBASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 AC006539.3-201ENST00000454258 129 ntBASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 OFD1P4Y-201ENST00000455273 1179 ntBASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 Y_RNA.638-201ENST00000459374 113 ntBASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 RPL21P10-201ENST00000463521 490 ntBASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 AC011825.1-201ENST00000484967 388 ntBASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 AC114967.1-201ENST00000504890 259 ntBASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 CDC42P4-201ENST00000510507 563 ntBASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 MAL2-206ENST00000522187 547 ntTSL 4 BASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 AC011979.2-201ENST00000527568 352 ntBASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 NRBF2P1-201ENST00000587407 859 ntBASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 AC006116.10-201ENST00000591836 581 ntBASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 AC002545.1-201ENST00000592511 181 ntBASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 IGKV1OR2-6-201ENST00000603485 277 ntBASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 NDUFA8P1-201ENST00000605525 367 ntBASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 AL451064.1-201ENST00000607718 471 ntBASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 AC004832.5-201ENST00000608677 401 ntBASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 AP000553.6-201ENST00000641242 118 ntBASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 RFX3-203ENST00000381984 364 ntTSL 3 BASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 RNU6-641P-201ENST00000384006 107 ntBASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 U3.19-201ENST00000390893 196 ntBASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 U3.39-201ENST00000408569 239 ntBASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 AC010975.2-201ENST00000427781 588 ntBASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 AC016696.1-201ENST00000446949 318 ntBASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 C1DP4-201ENST00000455429 424 ntBASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 AL359385.1-201ENST00000456509 365 ntBASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 AL031183.1-201ENST00000457667 207 ntBASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 RPS20P20-201ENST00000460498 340 ntBASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 AC021205.2-201ENST00000480069 347 ntBASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 AC004924.1-201ENST00000480160 781 ntBASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 RPS4XP22-201ENST00000480755 780 ntBASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 TTC39CP1-201ENST00000512513 755 ntBASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 RNU2-10P-201ENST00000516375 211 ntBASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 SCARNA24.1-201ENST00000516465 137 ntBASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 SCARNA14-201ENST00000516903 136 ntBASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 AC022695.1-201ENST00000522089 237 ntBASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 AC007458.1-201ENST00000542812 373 ntBASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 RPL23AP84-201ENST00000571193 464 ntBASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 MIR4325-201ENST00000583049 90 ntBASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 YPEL5P2-201ENST00000605553 359 ntBASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 AC013476.2-201ENST00000614456 459 ntBASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 AC015540.1-201ENST00000615828 501 ntBASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 OR5AK4P-201ENST00000635912 903 ntBASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 AL353743.1-202ENST00000431724 1695 ntBASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 AC091564.4-201ENST00000533934 2194 ntBASIC2.94□□□□□ -1.94
PDLIM3Q53GG5 RIOK3P1-201ENST00000418778 1528 ntBASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 152.7 ms