Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 RPL30P12-201ENST00000474666 353 ntBASIC0.65□□□□□ -2.31
COL7A1Q02388 AC096745.1-201ENST00000509945 370 ntBASIC0.65□□□□□ -2.31
COL7A1Q02388 MRPS33P3-201ENST00000513456 322 ntBASIC0.65□□□□□ -2.31
COL7A1Q02388 MIR4636-201ENST00000582271 80 ntBASIC0.65□□□□□ -2.31
COL7A1Q02388 SNORD114-21-201ENST00000606412 72 ntBASIC0.65□□□□□ -2.31
COL7A1Q02388 AC022079.2-201ENST00000619739 566 ntBASIC0.65□□□□□ -2.31
COL7A1Q02388 RNU1-62P-201ENST00000362599 164 ntBASIC0.64□□□□□ -2.31
COL7A1Q02388 RNU6-418P-201ENST00000384035 107 ntBASIC0.64□□□□□ -2.31
COL7A1Q02388 AP001960.1-201ENST00000506494 658 ntBASIC0.64□□□□□ -2.31
COL7A1Q02388 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC0.64□□□□□ -2.31
COL7A1Q02388 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC0.64□□□□□ -2.31
COL7A1Q02388 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC0.64□□□□□ -2.31
COL7A1Q02388 Y_RNA.700-201ENST00000516806 100 ntBASIC0.64□□□□□ -2.31
COL7A1Q02388 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC0.64□□□□□ -2.31
COL7A1Q02388 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC0.64□□□□□ -2.31
COL7A1Q02388 AL161734.1-201ENST00000609720 557 ntBASIC0.64□□□□□ -2.31
COL7A1Q02388 uc_338.22-201ENST00000622722 187 ntBASIC0.64□□□□□ -2.31
COL7A1Q02388 Z69720.2-201ENST00000624755 279 ntBASIC0.64□□□□□ -2.31
COL7A1Q02388 RNU6-1305P-201ENST00000364353 104 ntBASIC0.64□□□□□ -2.31
COL7A1Q02388 AC092745.2-202ENST00000411880 369 ntBASIC0.64□□□□□ -2.31
COL7A1Q02388 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC0.64□□□□□ -2.31
COL7A1Q02388 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC0.64□□□□□ -2.31
COL7A1Q02388 MTND4LP13-201ENST00000425022 298 ntBASIC0.64□□□□□ -2.31
COL7A1Q02388 ELOCP6-201ENST00000429066 328 ntBASIC0.64□□□□□ -2.31
COL7A1Q02388 AC015922.2-201ENST00000435593 184 ntBASIC0.64□□□□□ -2.31
COL7A1Q02388 ELOCP12-201ENST00000458706 328 ntBASIC0.64□□□□□ -2.31
COL7A1Q02388 AC010200.2-201ENST00000605098 235 ntBASIC0.64□□□□□ -2.31
COL7A1Q02388 AL589935.2-201ENST00000616471 1231 ntBASIC0.64□□□□□ -2.31
COL7A1Q02388 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC0.63□□□□□ -2.31
COL7A1Q02388 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC0.63□□□□□ -2.31
COL7A1Q02388 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC0.63□□□□□ -2.31
COL7A1Q02388 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC0.63□□□□□ -2.31
COL7A1Q02388 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC0.63□□□□□ -2.31
COL7A1Q02388 MTND3P24-201ENST00000506306 329 ntBASIC0.63□□□□□ -2.31
COL7A1Q02388 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC0.63□□□□□ -2.31
COL7A1Q02388 MRPS17P9-201ENST00000511924 393 ntBASIC0.63□□□□□ -2.31
COL7A1Q02388 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC0.63□□□□□ -2.31
COL7A1Q02388 MIR5194-201ENST00000582634 120 ntBASIC0.63□□□□□ -2.31
COL7A1Q02388 AL162373.1-201ENST00000620433 407 ntBASIC0.63□□□□□ -2.31
COL7A1Q02388 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC0.63□□□□□ -2.31
COL7A1Q02388 AC110491.1-201ENST00000562191 2010 ntBASIC0.63□□□□□ -2.31
COL7A1Q02388 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC0.63□□□□□ -2.31
COL7A1Q02388 Y_RNA.18-201ENST00000362461 102 ntBASIC0.63□□□□□ -2.31
COL7A1Q02388 RNA5SP25-201ENST00000410815 110 ntBASIC0.63□□□□□ -2.31
COL7A1Q02388 RNA5SP498-201ENST00000411342 120 ntBASIC0.63□□□□□ -2.31
COL7A1Q02388 RPS20P15-201ENST00000412792 311 ntBASIC0.63□□□□□ -2.31
COL7A1Q02388 CLIC4P1-201ENST00000453177 535 ntBASIC0.63□□□□□ -2.31
COL7A1Q02388 HMGB1P46-201ENST00000520062 610 ntBASIC0.63□□□□□ -2.31
COL7A1Q02388 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC0.63□□□□□ -2.31
COL7A1Q02388 AC005786.1-201ENST00000588553 154 ntBASIC0.63□□□□□ -2.31
COL7A1Q02388 HMGB1P24-202ENST00000615653 685 ntBASIC0.63□□□□□ -2.31
COL7A1Q02388 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC0.63□□□□□ -2.31
COL7A1Q02388 U8.3-201ENST00000363321 132 ntBASIC0.62□□□□□ -2.31
COL7A1Q02388 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC0.62□□□□□ -2.31
COL7A1Q02388 AC069277.2-201ENST00000454211 432 ntBASIC0.62□□□□□ -2.31
COL7A1Q02388 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC0.62□□□□□ -2.31
COL7A1Q02388 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC0.62□□□□□ -2.31
COL7A1Q02388 CDC42P4-201ENST00000510507 563 ntBASIC0.62□□□□□ -2.31
COL7A1Q02388 AC068714.1-201ENST00000559623 800 ntBASIC0.62□□□□□ -2.31
COL7A1Q02388 SNORD39.2-201ENST00000579995 76 ntBASIC0.62□□□□□ -2.31
COL7A1Q02388 AP001180.3-201ENST00000582221 145 ntBASIC0.62□□□□□ -2.31
COL7A1Q02388 AP001486.3-201ENST00000615334 372 ntBASIC0.62□□□□□ -2.31
COL7A1Q02388 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC0.62□□□□□ -2.31
COL7A1Q02388 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC0.62□□□□□ -2.31
COL7A1Q02388 RPL26P9-201ENST00000457466 433 ntBASIC0.62□□□□□ -2.31
COL7A1Q02388 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC0.62□□□□□ -2.31
COL7A1Q02388 AC022880.1-201ENST00000534017 973 ntBASIC0.62□□□□□ -2.31
COL7A1Q02388 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC0.62□□□□□ -2.31
COL7A1Q02388 VN1R84P-201ENST00000593697 235 ntBASIC0.62□□□□□ -2.31
COL7A1Q02388 AC008749.1-201ENST00000597650 306 ntBASIC0.62□□□□□ -2.31
COL7A1Q02388 AC091932.3-201ENST00000624223 323 ntBASIC0.62□□□□□ -2.31
COL7A1Q02388 SNORD14B-201ENST00000364533 90 ntBASIC0.61□□□□□ -2.31
COL7A1Q02388 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC0.61□□□□□ -2.31
COL7A1Q02388 AC060773.1-201ENST00000421698 310 ntBASIC0.61□□□□□ -2.31
COL7A1Q02388 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC0.61□□□□□ -2.31
COL7A1Q02388 AL357134.1-201ENST00000445848 426 ntBASIC0.61□□□□□ -2.31
COL7A1Q02388 AC104692.1-201ENST00000472406 90 ntBASIC0.61□□□□□ -2.31
COL7A1Q02388 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC0.61□□□□□ -2.31
COL7A1Q02388 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC0.61□□□□□ -2.31
COL7A1Q02388 LLPHP1-201ENST00000603571 367 ntBASIC0.61□□□□□ -2.31
COL7A1Q02388 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.61□□□□□ -2.31
COL7A1Q02388 AC010889.1-201ENST00000566193 2666 ntBASIC0.61□□□□□ -2.31
COL7A1Q02388 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC0.61□□□□□ -2.31
COL7A1Q02388 RNA5SP499-201ENST00000363982 119 ntBASIC0.61□□□□□ -2.31
COL7A1Q02388 RNU6-225P-201ENST00000384613 103 ntBASIC0.61□□□□□ -2.31
COL7A1Q02388 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC0.61□□□□□ -2.31
COL7A1Q02388 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC0.61□□□□□ -2.31
COL7A1Q02388 CASP1P1-201ENST00000526345 212 ntBASIC0.61□□□□□ -2.31
COL7A1Q02388 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC0.61□□□□□ -2.31
COL7A1Q02388 AC007275.1-201ENST00000621243 671 ntBASIC0.61□□□□□ -2.31
COL7A1Q02388 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC0.61□□□□□ -2.31
COL7A1Q02388 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC0.61□□□□□ -2.31
COL7A1Q02388 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC0.61□□□□□ -2.31
COL7A1Q02388 MIR6759-201ENST00000638110 65 ntBASIC0.61□□□□□ -2.31
COL7A1Q02388 AC073544.1-201ENST00000600110 1595 ntBASIC0.61□□□□□ -2.31
COL7A1Q02388 Y_RNA.572-201ENST00000384757 98 ntBASIC0.61□□□□□ -2.31
COL7A1Q02388 MIR329-2-201ENST00000385029 84 ntBASIC0.61□□□□□ -2.31
COL7A1Q02388 AL139397.2-201ENST00000404529 772 ntBASIC0.61□□□□□ -2.31
COL7A1Q02388 AC119618.1-201ENST00000434191 222 ntBASIC0.61□□□□□ -2.31
COL7A1Q02388 MTCO1P53-201ENST00000441633 699 ntBASIC0.61□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms