| MUC1 | P15941 | AC026407.1-201 | ENST00000518369 | 204 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| MUC1 | P15941 | ZFPM2-AS1-204 | ENST00000520433 | 748 nt | TSL 3 BASIC | 2.12 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AC103783.1-201 | ENST00000520506 | 373 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| MUC1 | P15941 | MTCO1P47-201 | ENST00000523889 | 1271 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| MUC1 | P15941 | MTATP6P15-201 | ENST00000527233 | 835 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AP004247.1-201 | ENST00000531556 | 1289 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| MUC1 | P15941 | KLRF2-201 | ENST00000535540 | 731 nt | APPRIS P1 TSL 1 (best) BASIC | 2.12 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AL450442.1-201 | ENST00000554042 | 854 nt | TSL 1 (best) BASIC | 2.12 | □□□□□ -2.07 | | |
| MUC1 | P15941 | MTND3P12-201 | ENST00000559068 | 328 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AC011260.1-201 | ENST00000578420 | 472 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| MUC1 | P15941 | ZNF573-209 | ENST00000585724 | 453 nt | TSL 5 BASIC | 2.12 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AC068313.1-201 | ENST00000604028 | 1008 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| MUC1 | P15941 | CLPTM1LP1-201 | ENST00000604519 | 484 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| MUC1 | P15941 | FBXW7-AS1-201 | ENST00000605147 | 372 nt | TSL 1 (best) BASIC | 2.12 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AC106028.5-201 | ENST00000610332 | 395 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AC092142.2-201 | ENST00000614642 | 354 nt | TSL 3 BASIC | 2.12 | □□□□□ -2.07 | | |
| MUC1 | P15941 | DLEU1_2.1-201 | ENST00000617920 | 342 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AC007998.5-201 | ENST00000622938 | 237 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AC099063.3-201 | ENST00000642066 | 185 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AL050331.3-201 | ENST00000448740 | 2081 nt | TSL 2 BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | C6orf10-201 | ENST00000375007 | 2125 nt | APPRIS ALT2 TSL 5 BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | EYS-211 | ENST00000503581 | 10589 nt | APPRIS P3 TSL 5 BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | RNU6-500P-201 | ENST00000362349 | 107 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | RNU5E-8P-201 | ENST00000363502 | 116 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | RNU6-1078P-201 | ENST00000364522 | 103 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | Y_RNA.510-201 | ENST00000384511 | 114 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | MIR1305-201 | ENST00000408300 | 86 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | RNU6ATAC16P-201 | ENST00000408591 | 138 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AL117337.1-201 | ENST00000412789 | 444 nt | TSL 3 BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AL663023.1-201 | ENST00000412932 | 853 nt | TSL 3 BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | HMGB1P11-201 | ENST00000413899 | 637 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AC007179.1-201 | ENST00000415159 | 438 nt | TSL 3 BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AC092447.3-201 | ENST00000426027 | 686 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | MTND5P25-201 | ENST00000430499 | 799 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AL139237.2-201 | ENST00000438454 | 493 nt | TSL 3 BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | FAM103A2P-201 | ENST00000444122 | 354 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AL731568.1-201 | ENST00000445111 | 434 nt | TSL 2 BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AF127577.5-201 | ENST00000449746 | 446 nt | TSL 3 BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AL133217.1-201 | ENST00000450980 | 425 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AC108938.1-201 | ENST00000451204 | 136 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | MIR4435-2HG-213 | ENST00000451884 | 423 nt | TSL 3 BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | ART2BP-201 | ENST00000453501 | 499 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AC106872.3-201 | ENST00000495104 | 446 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | THAP6-205 | ENST00000504190 | 1004 nt | TSL 1 (best) BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AC022483.1-201 | ENST00000514020 | 567 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AC010280.1-201 | ENST00000515199 | 340 nt | TSL 2 BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | SNORA70.16-201 | ENST00000516390 | 95 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | RNU1-103P-201 | ENST00000516502 | 125 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | RNU6-678P-201 | ENST00000516832 | 109 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AC021736.1-201 | ENST00000521143 | 563 nt | TSL 4 BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | ERHP1-201 | ENST00000523006 | 310 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AC022509.2-201 | ENST00000540392 | 699 nt | TSL 3 BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | CLEC2D-214 | ENST00000543300 | 399 nt | TSL 1 (best) BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | CLEC2D-216 | ENST00000545918 | 288 nt | TSL 1 (best) BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AL157955.1-201 | ENST00000554433 | 331 nt | TSL 3 BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AC002400.1-201 | ENST00000569310 | 726 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | COX6CP3-201 | ENST00000580869 | 223 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AC090616.5-201 | ENST00000581225 | 299 nt | TSL 5 BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AC060771.1-201 | ENST00000582031 | 164 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AC083798.2-205 | ENST00000608015 | 575 nt | TSL 5 BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AC034102.8-201 | ENST00000615146 | 484 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | MIR6817-201 | ENST00000615588 | 66 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AC008443.7-201 | ENST00000622195 | 246 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | PCMTD1P7-201 | ENST00000634506 | 357 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | MTND5P33-201 | ENST00000571250 | 1450 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AGTR1-208 | ENST00000475347 | 1669 nt | APPRIS P1 TSL 3 BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | MTCO1P9-201 | ENST00000505577 | 1534 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | NT5C3A-202 | ENST00000381626 | 1909 nt | APPRIS ALT1 TSL 5 BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | OGN-202 | ENST00000375561 | 2743 nt | APPRIS P1 TSL 1 (best) BASIC | 2.11 | □□□□□ -2.07 | | |
| MUC1 | P15941 | TRAPPC13-204 | ENST00000438419 | 1437 nt | APPRIS P4 TSL 1 (best) BASIC | 2.1 | □□□□□ -2.07 | | |
| MUC1 | P15941 | Y_RNA.97-201 | ENST00000363094 | 102 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| MUC1 | P15941 | RNA5SP68-201 | ENST00000363885 | 119 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| MUC1 | P15941 | RNU6-76P-201 | ENST00000384060 | 104 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AC091705.1-201 | ENST00000412197 | 209 nt | TSL 5 BASIC | 2.1 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AL157709.1-201 | ENST00000412695 | 424 nt | TSL 3 BASIC | 2.1 | □□□□□ -2.07 | | |
| MUC1 | P15941 | CCDC58P2-201 | ENST00000417131 | 366 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| MUC1 | P15941 | MORF4L1P6-201 | ENST00000418771 | 268 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AL645937.4-201 | ENST00000419702 | 389 nt | TSL 2 BASIC | 2.1 | □□□□□ -2.07 | | |
| MUC1 | P15941 | USP9YP26-201 | ENST00000421008 | 661 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AL445123.1-201 | ENST00000422023 | 446 nt | TSL 2 BASIC | 2.1 | □□□□□ -2.07 | | |
| MUC1 | P15941 | PPP1R11P2-201 | ENST00000423543 | 382 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AC017074.1-201 | ENST00000424612 | 561 nt | TSL 3 BASIC | 2.1 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AC234781.2-201 | ENST00000426370 | 994 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| MUC1 | P15941 | MYCBP2-AS2-201 | ENST00000428716 | 428 nt | TSL 5 BASIC | 2.1 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AC092598.1-201 | ENST00000431708 | 797 nt | TSL 3 BASIC | 2.1 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AC104653.2-201 | ENST00000435407 | 416 nt | TSL 3 BASIC | 2.1 | □□□□□ -2.07 | | |
| MUC1 | P15941 | LARP1BP3-201 | ENST00000437229 | 869 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| MUC1 | P15941 | KRTAP19-11P-201 | ENST00000439851 | 104 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| MUC1 | P15941 | MTND1P26-201 | ENST00000440488 | 538 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| MUC1 | P15941 | PGBD4P3-201 | ENST00000440731 | 581 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AL135787.1-201 | ENST00000450154 | 302 nt | TSL 3 BASIC | 2.1 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AC068587.2-201 | ENST00000478386 | 781 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| MUC1 | P15941 | LINC01997-201 | ENST00000494900 | 429 nt | TSL 2 BASIC | 2.1 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AC020703.1-201 | ENST00000505051 | 521 nt | TSL 3 BASIC | 2.1 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AC010486.2-201 | ENST00000505572 | 483 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| MUC1 | P15941 | TEMN3-AS1-201 | ENST00000510211 | 401 nt | TSL 3 BASIC | 2.1 | □□□□□ -2.07 | | |
| MUC1 | P15941 | AC109454.3-201 | ENST00000512748 | 669 nt | TSL 3 BASIC | 2.1 | □□□□□ -2.07 | | |
| MUC1 | P15941 | RNU6-759P-201 | ENST00000516740 | 103 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| MUC1 | P15941 | RNU6-798P-201 | ENST00000516912 | 103 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| MUC1 | P15941 | RNU4ATAC17P-201 | ENST00000517272 | 120 nt | BASIC | 2.1 | □□□□□ -2.07 | | |