Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
FOXF1Q12946 AL161938.1-201ENST00000569833 2180 ntBASIC17.29■□□□□ 0.36
FOXF1Q12946 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
FOXF1Q12946 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
FOXF1Q12946 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
FOXF1Q12946 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC17.29■□□□□ 0.36
FOXF1Q12946 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
FOXF1Q12946 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
FOXF1Q12946 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXF1Q12946 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC17.28■□□□□ 0.36
FOXF1Q12946 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXF1Q12946 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
FOXF1Q12946 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
FOXF1Q12946 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC17.28■□□□□ 0.36
FOXF1Q12946 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXF1Q12946 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXF1Q12946 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXF1Q12946 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
FOXF1Q12946 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXF1Q12946 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXF1Q12946 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXF1Q12946 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXF1Q12946 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
FOXF1Q12946 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC17.28■□□□□ 0.36
FOXF1Q12946 SLC25A1P4-201ENST00000567977 778 ntBASIC17.28■□□□□ 0.36
FOXF1Q12946 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC17.28■□□□□ 0.36
FOXF1Q12946 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC17.28■□□□□ 0.36
FOXF1Q12946 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC17.28■□□□□ 0.36
FOXF1Q12946 AP000525.1-201ENST00000608286 694 ntBASIC17.28■□□□□ 0.36
FOXF1Q12946 SNX21-213ENST00000614929 587 ntTSL 5 BASIC17.28■□□□□ 0.36
FOXF1Q12946 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXF1Q12946 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXF1Q12946 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC17.28■□□□□ 0.36
FOXF1Q12946 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
FOXF1Q12946 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
FOXF1Q12946 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
FOXF1Q12946 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
FOXF1Q12946 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC17.27■□□□□ 0.36
FOXF1Q12946 UBQLN4P1-201ENST00000461599 1801 ntBASIC17.27■□□□□ 0.36
FOXF1Q12946 UNC93B2-201ENST00000285383 730 ntBASIC17.27■□□□□ 0.36
FOXF1Q12946 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC17.27■□□□□ 0.36
FOXF1Q12946 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
FOXF1Q12946 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
FOXF1Q12946 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC17.27■□□□□ 0.36
FOXF1Q12946 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17.27■□□□□ 0.36
FOXF1Q12946 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC17.27■□□□□ 0.36
FOXF1Q12946 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC17.27■□□□□ 0.36
FOXF1Q12946 TSPY15P-201ENST00000457163 923 ntBASIC17.27■□□□□ 0.36
FOXF1Q12946 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.36
FOXF1Q12946 FDX2-206ENST00000492239 773 ntTSL 2 BASIC17.27■□□□□ 0.36
FOXF1Q12946 AC097488.1-201ENST00000507834 756 ntBASIC17.27■□□□□ 0.36
FOXF1Q12946 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
FOXF1Q12946 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
FOXF1Q12946 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
FOXF1Q12946 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
FOXF1Q12946 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
FOXF1Q12946 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC17.27■□□□□ 0.35
FOXF1Q12946 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
FOXF1Q12946 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
FOXF1Q12946 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
FOXF1Q12946 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.35
FOXF1Q12946 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
FOXF1Q12946 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
FOXF1Q12946 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
FOXF1Q12946 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
FOXF1Q12946 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
FOXF1Q12946 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
FOXF1Q12946 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
FOXF1Q12946 FP475955.4-201ENST00000623131 1990 ntBASIC17.26■□□□□ 0.35
FOXF1Q12946 AC079598.2-202ENST00000546624 1451 ntBASIC17.26■□□□□ 0.35
FOXF1Q12946 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
FOXF1Q12946 AL049812.1-201ENST00000432563 2267 ntBASIC17.26■□□□□ 0.35
FOXF1Q12946 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
FOXF1Q12946 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
FOXF1Q12946 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
FOXF1Q12946 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
FOXF1Q12946 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
FOXF1Q12946 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC17.26■□□□□ 0.35
FOXF1Q12946 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
FOXF1Q12946 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
FOXF1Q12946 MFAP1P1-201ENST00000442257 1255 ntBASIC17.26■□□□□ 0.35
FOXF1Q12946 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
FOXF1Q12946 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
FOXF1Q12946 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC17.26■□□□□ 0.35
FOXF1Q12946 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC17.26■□□□□ 0.35
FOXF1Q12946 CKBP1-201ENST00000565489 1086 ntBASIC17.26■□□□□ 0.35
FOXF1Q12946 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.26■□□□□ 0.35
FOXF1Q12946 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC17.26■□□□□ 0.35
FOXF1Q12946 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
FOXF1Q12946 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC17.26■□□□□ 0.35
FOXF1Q12946 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
FOXF1Q12946 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
FOXF1Q12946 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
FOXF1Q12946 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
FOXF1Q12946 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
FOXF1Q12946 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC17.26■□□□□ 0.35
FOXF1Q12946 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC17.26■□□□□ 0.35
FOXF1Q12946 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
FOXF1Q12946 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
FOXF1Q12946 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms