Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSH3P20585 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
MSH3P20585 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
MSH3P20585 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
MSH3P20585 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSH3P20585 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC18.99■□□□□ 0.63
MSH3P20585 KRT8P41-201ENST00000533985 1514 ntBASIC18.99■□□□□ 0.63
MSH3P20585 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
MSH3P20585 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
MSH3P20585 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSH3P20585 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSH3P20585 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSH3P20585 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSH3P20585 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSH3P20585 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSH3P20585 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSH3P20585 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSH3P20585 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.98■□□□□ 0.63
MSH3P20585 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.98■□□□□ 0.63
MSH3P20585 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
MSH3P20585 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSH3P20585 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSH3P20585 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
MSH3P20585 AL032819.2-201ENST00000624543 2162 ntBASIC18.98■□□□□ 0.63
MSH3P20585 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSH3P20585 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
MSH3P20585 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
MSH3P20585 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC18.98■□□□□ 0.63
MSH3P20585 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
MSH3P20585 AC091390.4-202ENST00000476426 537 ntBASIC18.98■□□□□ 0.63
MSH3P20585 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC18.98■□□□□ 0.63
MSH3P20585 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
MSH3P20585 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC18.98■□□□□ 0.63
MSH3P20585 REXO1L10P-201ENST00000615707 1290 ntBASIC18.98■□□□□ 0.63
MSH3P20585 AC130371.2-201ENST00000619443 611 ntBASIC18.98■□□□□ 0.63
MSH3P20585 REXO1L12P-201ENST00000622156 912 ntBASIC18.98■□□□□ 0.63
MSH3P20585 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.98■□□□□ 0.63
MSH3P20585 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSH3P20585 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.98■□□□□ 0.63
MSH3P20585 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
MSH3P20585 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
MSH3P20585 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC18.98■□□□□ 0.63
MSH3P20585 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.98■□□□□ 0.63
MSH3P20585 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSH3P20585 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSH3P20585 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
MSH3P20585 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSH3P20585 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
MSH3P20585 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
MSH3P20585 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
MSH3P20585 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC18.97■□□□□ 0.63
MSH3P20585 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.97■□□□□ 0.63
MSH3P20585 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.97■□□□□ 0.63
MSH3P20585 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
MSH3P20585 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
MSH3P20585 FAM207BP-201ENST00000447172 505 ntBASIC18.97■□□□□ 0.63
MSH3P20585 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC18.97■□□□□ 0.63
MSH3P20585 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
MSH3P20585 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
MSH3P20585 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
MSH3P20585 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
MSH3P20585 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
MSH3P20585 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.96■□□□□ 0.63
MSH3P20585 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.96■□□□□ 0.63
MSH3P20585 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MSH3P20585 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
MSH3P20585 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC18.96■□□□□ 0.63
MSH3P20585 MESTP1-201ENST00000404287 994 ntBASIC18.96■□□□□ 0.63
MSH3P20585 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC18.96■□□□□ 0.63
MSH3P20585 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC18.96■□□□□ 0.63
MSH3P20585 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.96■□□□□ 0.63
MSH3P20585 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC18.96■□□□□ 0.63
MSH3P20585 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
MSH3P20585 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.96■□□□□ 0.63
MSH3P20585 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MSH3P20585 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MSH3P20585 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MSH3P20585 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MSH3P20585 AC098818.2-201ENST00000564925 2320 ntBASIC18.96■□□□□ 0.63
MSH3P20585 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MSH3P20585 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MSH3P20585 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC18.96■□□□□ 0.63
MSH3P20585 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
MSH3P20585 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
MSH3P20585 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
MSH3P20585 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
MSH3P20585 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
MSH3P20585 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
MSH3P20585 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
MSH3P20585 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MSH3P20585 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC18.95■□□□□ 0.62
MSH3P20585 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC18.95■□□□□ 0.62
MSH3P20585 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
MSH3P20585 TSPY21P-201ENST00000433481 731 ntBASIC18.95■□□□□ 0.62
MSH3P20585 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC18.95■□□□□ 0.62
MSH3P20585 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC18.95■□□□□ 0.62
MSH3P20585 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC18.95■□□□□ 0.62
MSH3P20585 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MSH3P20585 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MSH3P20585 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms