Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 NXN-202ENST00000537628 1340 ntTSL 3 BASIC22.19■■□□□ 1.14
PRPF40AO75400 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
PRPF40AO75400 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
PRPF40AO75400 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PRPF40AO75400 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PRPF40AO75400 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC22.18■■□□□ 1.14
PRPF40AO75400 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
PRPF40AO75400 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
PRPF40AO75400 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
PRPF40AO75400 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
PRPF40AO75400 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC22.18■■□□□ 1.14
PRPF40AO75400 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
PRPF40AO75400 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
PRPF40AO75400 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC22.18■■□□□ 1.14
PRPF40AO75400 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
PRPF40AO75400 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC22.18■■□□□ 1.14
PRPF40AO75400 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC22.18■■□□□ 1.14
PRPF40AO75400 SERP1-205ENST00000487153 657 ntTSL 4 BASIC22.18■■□□□ 1.14
PRPF40AO75400 EMC9-206ENST00000560403 872 ntTSL 2 BASIC22.18■■□□□ 1.14
PRPF40AO75400 AC105036.2-201ENST00000569468 176 ntBASIC22.18■■□□□ 1.14
PRPF40AO75400 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC22.18■■□□□ 1.14
PRPF40AO75400 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC22.18■■□□□ 1.14
PRPF40AO75400 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
PRPF40AO75400 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC22.18■■□□□ 1.14
PRPF40AO75400 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
PRPF40AO75400 AP000997.3-201ENST00000623333 2250 ntBASIC22.18■■□□□ 1.14
PRPF40AO75400 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
PRPF40AO75400 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
PRPF40AO75400 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
PRPF40AO75400 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC22.18■■□□□ 1.14
PRPF40AO75400 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
PRPF40AO75400 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC22.17■■□□□ 1.14
PRPF40AO75400 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
PRPF40AO75400 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC22.17■■□□□ 1.14
PRPF40AO75400 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC22.17■■□□□ 1.14
PRPF40AO75400 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC22.17■■□□□ 1.14
PRPF40AO75400 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC22.17■■□□□ 1.14
PRPF40AO75400 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC22.17■■□□□ 1.14
PRPF40AO75400 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC22.17■■□□□ 1.14
PRPF40AO75400 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC22.17■■□□□ 1.14
PRPF40AO75400 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PRPF40AO75400 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
PRPF40AO75400 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC22.16■■□□□ 1.14
PRPF40AO75400 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PRPF40AO75400 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC22.16■■□□□ 1.14
PRPF40AO75400 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC22.16■■□□□ 1.14
PRPF40AO75400 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC22.16■■□□□ 1.14
PRPF40AO75400 PXK-206ENST00000463280 2825 ntTSL 2 BASIC22.16■■□□□ 1.14
PRPF40AO75400 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC22.16■■□□□ 1.14
PRPF40AO75400 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
PRPF40AO75400 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC22.16■■□□□ 1.14
PRPF40AO75400 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PRPF40AO75400 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PRPF40AO75400 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
PRPF40AO75400 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC22.16■■□□□ 1.14
PRPF40AO75400 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PRPF40AO75400 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC22.16■■□□□ 1.14
PRPF40AO75400 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC22.16■■□□□ 1.14
PRPF40AO75400 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PRPF40AO75400 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
PRPF40AO75400 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PRPF40AO75400 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC22.16■■□□□ 1.14
PRPF40AO75400 TSPY6P-201ENST00000448518 926 ntBASIC22.16■■□□□ 1.14
PRPF40AO75400 HES2-205ENST00000487437 968 ntTSL 3 BASIC22.16■■□□□ 1.14
PRPF40AO75400 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC22.16■■□□□ 1.14
PRPF40AO75400 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC22.16■■□□□ 1.14
PRPF40AO75400 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
PRPF40AO75400 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
PRPF40AO75400 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
PRPF40AO75400 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC22.16■■□□□ 1.14
PRPF40AO75400 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PRPF40AO75400 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
PRPF40AO75400 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PRPF40AO75400 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PRPF40AO75400 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PRPF40AO75400 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PRPF40AO75400 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PRPF40AO75400 UBQLN4P1-201ENST00000461599 1801 ntBASIC22.15■■□□□ 1.14
PRPF40AO75400 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC22.15■■□□□ 1.14
PRPF40AO75400 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PRPF40AO75400 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PRPF40AO75400 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC22.15■■□□□ 1.14
PRPF40AO75400 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC22.15■■□□□ 1.14
PRPF40AO75400 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC22.15■■□□□ 1.14
PRPF40AO75400 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PRPF40AO75400 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC22.15■■□□□ 1.14
PRPF40AO75400 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC22.15■■□□□ 1.14
PRPF40AO75400 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
PRPF40AO75400 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC22.15■■□□□ 1.14
PRPF40AO75400 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC22.15■■□□□ 1.14
PRPF40AO75400 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PRPF40AO75400 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PRPF40AO75400 AC093787.1-201ENST00000450396 207 ntBASIC22.15■■□□□ 1.14
PRPF40AO75400 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC22.15■■□□□ 1.14
PRPF40AO75400 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC22.15■■□□□ 1.14
PRPF40AO75400 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC22.15■■□□□ 1.14
PRPF40AO75400 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PRPF40AO75400 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC22.15■■□□□ 1.14
PRPF40AO75400 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
PRPF40AO75400 ANKRD18DP-204ENST00000455355 1975 ntBASIC22.15■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms