Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC7.08□□□□□ -1.28
CCDC61Q9Y6R9 RN7SL346P-201ENST00000491561 294 ntBASIC7.08□□□□□ -1.28
CCDC61Q9Y6R9 RPL23AP75-201ENST00000491601 451 ntBASIC7.08□□□□□ -1.28
CCDC61Q9Y6R9 Y_RNA.677-201ENST00000516401 85 ntBASIC7.08□□□□□ -1.28
CCDC61Q9Y6R9 AP003327.1-201ENST00000529684 127 ntBASIC7.08□□□□□ -1.28
CCDC61Q9Y6R9 LARP7P3-201ENST00000579888 337 ntBASIC7.08□□□□□ -1.28
CCDC61Q9Y6R9 AC024153.1-201ENST00000603103 365 ntBASIC7.08□□□□□ -1.28
CCDC61Q9Y6R9 AC022441.3-201ENST00000605737 136 ntBASIC7.08□□□□□ -1.28
CCDC61Q9Y6R9 MIR7703-201ENST00000620784 77 ntBASIC7.08□□□□□ -1.28
CCDC61Q9Y6R9 snoZ196.1-201ENST00000625269 89 ntBASIC7.08□□□□□ -1.28
CCDC61Q9Y6R9 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC7.08□□□□□ -1.28
CCDC61Q9Y6R9 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC7.08□□□□□ -1.28
CCDC61Q9Y6R9 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
CCDC61Q9Y6R9 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC7.08□□□□□ -1.28
CCDC61Q9Y6R9 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
CCDC61Q9Y6R9 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC7.08□□□□□ -1.28
CCDC61Q9Y6R9 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
CCDC61Q9Y6R9 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
CCDC61Q9Y6R9 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
CCDC61Q9Y6R9 AC073365.1-203ENST00000641055 1992 ntBASIC7.08□□□□□ -1.28
CCDC61Q9Y6R9 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC7.08□□□□□ -1.28
CCDC61Q9Y6R9 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
CCDC61Q9Y6R9 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC7.07□□□□□ -1.28
CCDC61Q9Y6R9 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
CCDC61Q9Y6R9 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
CCDC61Q9Y6R9 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC7.07□□□□□ -1.28
CCDC61Q9Y6R9 AK9-203ENST00000368948 2478 ntTSL 5 BASIC7.07□□□□□ -1.28
CCDC61Q9Y6R9 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC7.07□□□□□ -1.28
CCDC61Q9Y6R9 AC097461.1-201ENST00000568928 2821 ntBASIC7.07□□□□□ -1.28
CCDC61Q9Y6R9 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
CCDC61Q9Y6R9 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC7.07□□□□□ -1.28
CCDC61Q9Y6R9 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
CCDC61Q9Y6R9 MIR412-201ENST00000362142 91 ntBASIC7.07□□□□□ -1.28
CCDC61Q9Y6R9 RNU6-428P-201ENST00000362942 107 ntBASIC7.07□□□□□ -1.28
CCDC61Q9Y6R9 RN7SKP153-201ENST00000365026 316 ntBASIC7.07□□□□□ -1.28
CCDC61Q9Y6R9 RPL12P18-201ENST00000437175 325 ntBASIC7.07□□□□□ -1.28
CCDC61Q9Y6R9 AC112498.1-201ENST00000444401 332 ntBASIC7.07□□□□□ -1.28
CCDC61Q9Y6R9 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC7.07□□□□□ -1.28
CCDC61Q9Y6R9 AC100767.1-201ENST00000528178 123 ntBASIC7.07□□□□□ -1.28
CCDC61Q9Y6R9 BNIP3P5-201ENST00000562290 498 ntBASIC7.07□□□□□ -1.28
CCDC61Q9Y6R9 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC7.07□□□□□ -1.28
CCDC61Q9Y6R9 NF1P5-201ENST00000588287 448 ntBASIC7.07□□□□□ -1.28
CCDC61Q9Y6R9 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC7.07□□□□□ -1.28
CCDC61Q9Y6R9 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC7.07□□□□□ -1.28
CCDC61Q9Y6R9 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
CCDC61Q9Y6R9 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 RNA5SP52-201ENST00000362448 134 ntBASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 RNU6-968P-201ENST00000384076 107 ntBASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 RNU6-541P-201ENST00000384709 110 ntBASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 SNORA66-201ENST00000384792 133 ntBASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 AL035079.1-201ENST00000405210 287 ntBASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 RNU2-21P-201ENST00000410368 188 ntBASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 PPP1R11P2-201ENST00000423543 382 ntBASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 AL353705.4-201ENST00000449661 238 ntBASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 RN7SL189P-201ENST00000468631 289 ntBASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 AC008897.1-201ENST00000494006 347 ntBASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 APOOP4-201ENST00000513530 597 ntBASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 RNA5SP165-201ENST00000517142 115 ntBASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 AC008489.1-201ENST00000524271 483 ntBASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 NACAP3-201ENST00000552100 481 ntBASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 RN7SL52P-201ENST00000584271 284 ntBASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 MIR6780A-201ENST00000615089 68 ntBASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 RN7SL722P-201ENST00000617780 284 ntBASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 RN7SL565P-201ENST00000618246 284 ntBASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 AC004076.2-201ENST00000620532 3323 ntBASIC7.06□□□□□ -1.28
CCDC61Q9Y6R9 USP8-204ENST00000425032 3559 ntTSL 2 BASIC7.05□□□□□ -1.28
CCDC61Q9Y6R9 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC7.05□□□□□ -1.28
CCDC61Q9Y6R9 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC7.05□□□□□ -1.28
CCDC61Q9Y6R9 AL451142.2-201ENST00000429076 2090 ntBASIC7.05□□□□□ -1.28
CCDC61Q9Y6R9 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
CCDC61Q9Y6R9 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC7.05□□□□□ -1.28
CCDC61Q9Y6R9 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC7.05□□□□□ -1.28
CCDC61Q9Y6R9 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
CCDC61Q9Y6R9 RNU6-339P-201ENST00000384310 107 ntBASIC7.05□□□□□ -1.28
CCDC61Q9Y6R9 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC7.05□□□□□ -1.28
CCDC61Q9Y6R9 AP000936.3-201ENST00000438127 255 ntBASIC7.05□□□□□ -1.28
CCDC61Q9Y6R9 REG1CP-206ENST00000447469 496 ntBASIC7.05□□□□□ -1.28
CCDC61Q9Y6R9 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC7.05□□□□□ -1.28
CCDC61Q9Y6R9 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC7.05□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms