Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC2.66□□□□□ -1.98
FOXA2Q9Y261 AL358072.1-201ENST00000604156 575 ntBASIC2.66□□□□□ -1.98
FOXA2Q9Y261 ELOCP35-201ENST00000604289 336 ntBASIC2.66□□□□□ -1.98
FOXA2Q9Y261 U1.23-201ENST00000610293 146 ntBASIC2.66□□□□□ -1.98
FOXA2Q9Y261 RNU1-68P-201ENST00000615382 146 ntBASIC2.66□□□□□ -1.98
FOXA2Q9Y261 AC084757.4-201ENST00000616350 526 ntBASIC2.66□□□□□ -1.98
FOXA2Q9Y261 AC012314.7-201ENST00000619693 93 ntBASIC2.66□□□□□ -1.98
FOXA2Q9Y261 U1.39-201ENST00000621562 146 ntBASIC2.66□□□□□ -1.98
FOXA2Q9Y261 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
FOXA2Q9Y261 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC2.66□□□□□ -1.98
FOXA2Q9Y261 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.66□□□□□ -1.98
FOXA2Q9Y261 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
FOXA2Q9Y261 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC2.65□□□□□ -1.98
FOXA2Q9Y261 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.65□□□□□ -1.98
FOXA2Q9Y261 MTND4P4-201ENST00000439033 1366 ntBASIC2.65□□□□□ -1.98
FOXA2Q9Y261 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC2.65□□□□□ -1.99
FOXA2Q9Y261 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC2.65□□□□□ -1.99
FOXA2Q9Y261 RNU6-750P-201ENST00000390946 107 ntBASIC2.65□□□□□ -1.99
FOXA2Q9Y261 RPA3-203ENST00000401447 414 ntTSL 3 BASIC2.65□□□□□ -1.99
FOXA2Q9Y261 RPL5P18-201ENST00000406671 891 ntBASIC2.65□□□□□ -1.99
FOXA2Q9Y261 RNA5SP44-201ENST00000410446 133 ntBASIC2.65□□□□□ -1.99
FOXA2Q9Y261 RPS12P24-201ENST00000412619 387 ntBASIC2.65□□□□□ -1.99
FOXA2Q9Y261 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC2.65□□□□□ -1.99
FOXA2Q9Y261 YME1L1P1-201ENST00000429435 297 ntBASIC2.65□□□□□ -1.99
FOXA2Q9Y261 RPS6P15-201ENST00000431996 751 ntBASIC2.65□□□□□ -1.99
FOXA2Q9Y261 RPL7P34-201ENST00000433316 712 ntBASIC2.65□□□□□ -1.99
FOXA2Q9Y261 HMGB3P12-201ENST00000438745 556 ntBASIC2.65□□□□□ -1.99
FOXA2Q9Y261 AL513043.1-201ENST00000439124 535 ntBASIC2.65□□□□□ -1.99
FOXA2Q9Y261 AC098831.1-201ENST00000440661 216 ntBASIC2.65□□□□□ -1.99
FOXA2Q9Y261 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC2.65□□□□□ -1.99
FOXA2Q9Y261 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC2.65□□□□□ -1.99
FOXA2Q9Y261 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC2.65□□□□□ -1.99
FOXA2Q9Y261 AC093899.1-201ENST00000457984 376 ntBASIC2.65□□□□□ -1.99
FOXA2Q9Y261 AC126182.1-201ENST00000478134 357 ntBASIC2.65□□□□□ -1.99
FOXA2Q9Y261 RPL23AP70-201ENST00000483361 460 ntBASIC2.65□□□□□ -1.99
FOXA2Q9Y261 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC2.65□□□□□ -1.99
FOXA2Q9Y261 AC109486.1-201ENST00000486833 374 ntBASIC2.65□□□□□ -1.99
FOXA2Q9Y261 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC2.65□□□□□ -1.99
FOXA2Q9Y261 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC2.65□□□□□ -1.99
FOXA2Q9Y261 IGKV2-26-201ENST00000518305 343 ntBASIC2.65□□□□□ -1.99
FOXA2Q9Y261 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC2.65□□□□□ -1.99
FOXA2Q9Y261 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC2.65□□□□□ -1.99
FOXA2Q9Y261 TRAV37-201ENST00000553906 342 ntBASIC2.65□□□□□ -1.99
FOXA2Q9Y261 NCAPGP2-201ENST00000557911 754 ntBASIC2.65□□□□□ -1.99
FOXA2Q9Y261 MIR3915-201ENST00000578518 97 ntBASIC2.65□□□□□ -1.99
FOXA2Q9Y261 MIR4444-1-201ENST00000581696 74 ntBASIC2.65□□□□□ -1.99
FOXA2Q9Y261 MIR4444-2-201ENST00000584390 74 ntBASIC2.65□□□□□ -1.99
FOXA2Q9Y261 MIR4276-201ENST00000584832 70 ntBASIC2.65□□□□□ -1.99
FOXA2Q9Y261 BNIP3P33-201ENST00000598912 569 ntBASIC2.65□□□□□ -1.99
FOXA2Q9Y261 MIR92B-201ENST00000607575 96 ntBASIC2.65□□□□□ -1.99
FOXA2Q9Y261 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC2.65□□□□□ -1.99
FOXA2Q9Y261 AC091931.1-201ENST00000623488 728 ntBASIC2.65□□□□□ -1.99
FOXA2Q9Y261 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC2.65□□□□□ -1.99
FOXA2Q9Y261 MTND5P42-201ENST00000637720 498 ntBASIC2.65□□□□□ -1.99
FOXA2Q9Y261 ADAM3A-203ENST00000461344 2157 ntBASIC2.65□□□□□ -1.99
FOXA2Q9Y261 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC2.65□□□□□ -1.99
FOXA2Q9Y261 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.65□□□□□ -1.99
FOXA2Q9Y261 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC2.65□□□□□ -1.99
FOXA2Q9Y261 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC2.65□□□□□ -1.99
FOXA2Q9Y261 HSPE1P11-201ENST00000339579 310 ntBASIC2.64□□□□□ -1.99
FOXA2Q9Y261 RNU1-33P-201ENST00000364249 162 ntBASIC2.64□□□□□ -1.99
FOXA2Q9Y261 RNA5SP72-201ENST00000364442 117 ntBASIC2.64□□□□□ -1.99
FOXA2Q9Y261 MIR627-201ENST00000384979 97 ntBASIC2.64□□□□□ -1.99
FOXA2Q9Y261 RNA5SP229-201ENST00000410809 99 ntBASIC2.64□□□□□ -1.99
FOXA2Q9Y261 AC007899.1-201ENST00000412776 775 ntBASIC2.64□□□□□ -1.99
FOXA2Q9Y261 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC2.64□□□□□ -1.99
FOXA2Q9Y261 AC096649.2-201ENST00000416186 393 ntBASIC2.64□□□□□ -1.99
FOXA2Q9Y261 ELOCP4-201ENST00000420090 333 ntBASIC2.64□□□□□ -1.99
FOXA2Q9Y261 ATP6V0E1P4-201ENST00000427294 242 ntBASIC2.64□□□□□ -1.99
FOXA2Q9Y261 AL159987.2-201ENST00000432754 307 ntBASIC2.64□□□□□ -1.99
FOXA2Q9Y261 AL591212.2-201ENST00000433923 257 ntBASIC2.64□□□□□ -1.99
FOXA2Q9Y261 ATP5C1P1-201ENST00000441945 895 ntBASIC2.64□□□□□ -1.99
FOXA2Q9Y261 USP9YP15-201ENST00000442391 422 ntBASIC2.64□□□□□ -1.99
FOXA2Q9Y261 DPPA3P1-201ENST00000448050 469 ntBASIC2.64□□□□□ -1.99
FOXA2Q9Y261 PRSS3P4-201ENST00000453323 162 ntBASIC2.64□□□□□ -1.99
FOXA2Q9Y261 SNRPFP4-201ENST00000456366 242 ntBASIC2.64□□□□□ -1.99
FOXA2Q9Y261 MTCO2P29-201ENST00000465212 189 ntBASIC2.64□□□□□ -1.99
FOXA2Q9Y261 NDUFB4P2-201ENST00000509515 391 ntBASIC2.64□□□□□ -1.99
FOXA2Q9Y261 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC2.64□□□□□ -1.99
FOXA2Q9Y261 FABP5P5-201ENST00000515537 406 ntBASIC2.64□□□□□ -1.99
FOXA2Q9Y261 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC2.64□□□□□ -1.99
FOXA2Q9Y261 AP003467.2-201ENST00000520175 319 ntBASIC2.64□□□□□ -1.99
FOXA2Q9Y261 AC245166.1-201ENST00000521012 253 ntBASIC2.64□□□□□ -1.99
FOXA2Q9Y261 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC2.64□□□□□ -1.99
FOXA2Q9Y261 COX6CP5-201ENST00000527162 228 ntBASIC2.64□□□□□ -1.99
FOXA2Q9Y261 ZDHHC20P3-201ENST00000531576 336 ntBASIC2.64□□□□□ -1.99
FOXA2Q9Y261 AC007458.1-201ENST00000542812 373 ntBASIC2.64□□□□□ -1.99
FOXA2Q9Y261 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
FOXA2Q9Y261 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
FOXA2Q9Y261 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC2.64□□□□□ -1.99
FOXA2Q9Y261 AC109446.2-201ENST00000567872 497 ntBASIC2.64□□□□□ -1.99
FOXA2Q9Y261 AC024619.4-201ENST00000580924 316 ntBASIC2.64□□□□□ -1.99
FOXA2Q9Y261 MIR548AB-201ENST00000584917 84 ntBASIC2.64□□□□□ -1.99
FOXA2Q9Y261 CKS1BP3-201ENST00000600888 237 ntBASIC2.64□□□□□ -1.99
FOXA2Q9Y261 AL365204.3-201ENST00000612448 685 ntBASIC2.64□□□□□ -1.99
FOXA2Q9Y261 AC244100.1-202ENST00000621554 382 ntBASIC2.64□□□□□ -1.99
FOXA2Q9Y261 AP003485.2-201ENST00000623636 610 ntBASIC2.64□□□□□ -1.99
FOXA2Q9Y261 AC120349.3-201ENST00000624377 529 ntBASIC2.64□□□□□ -1.99
FOXA2Q9Y261 AL512643.1-201ENST00000635735 524 ntBASIC2.64□□□□□ -1.99
FOXA2Q9Y261 Z99571.1-201ENST00000636677 394 ntBASIC2.64□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 111.9 ms