Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 KC877373.1-201ENST00000479066 408 ntBASIC5.61□□□□□ -1.51
COL17A1Q9UMD9 AC098591.2-201ENST00000510152 315 ntBASIC5.61□□□□□ -1.51
COL17A1Q9UMD9 RNU2-53P-201ENST00000516257 147 ntBASIC5.61□□□□□ -1.51
COL17A1Q9UMD9 SNORD60.2-201ENST00000516883 86 ntBASIC5.61□□□□□ -1.51
COL17A1Q9UMD9 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC5.61□□□□□ -1.51
COL17A1Q9UMD9 FTH1P11-201ENST00000517577 551 ntBASIC5.61□□□□□ -1.51
COL17A1Q9UMD9 AC113195.1-201ENST00000579952 141 ntBASIC5.61□□□□□ -1.51
COL17A1Q9UMD9 MIR3128-201ENST00000581957 66 ntBASIC5.61□□□□□ -1.51
COL17A1Q9UMD9 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
COL17A1Q9UMD9 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
COL17A1Q9UMD9 MTND5P19-201ENST00000424872 1794 ntBASIC5.61□□□□□ -1.51
COL17A1Q9UMD9 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC5.61□□□□□ -1.51
COL17A1Q9UMD9 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL17A1Q9UMD9 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL17A1Q9UMD9 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 Y_RNA.60-201ENST00000362831 98 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 RNU6-662P-201ENST00000384253 104 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 RNU6-456P-201ENST00000384493 107 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 RNU6-952P-201ENST00000391164 108 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 RNU6-1158P-201ENST00000391167 107 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 MTATP6P18-201ENST00000417994 673 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 HSPE1P1-201ENST00000421494 318 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 RPS6P12-201ENST00000432491 726 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 RSU1P2-202ENST00000437884 485 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 SNORA71B-202ENST00000439232 272 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 BNIP3P2-201ENST00000441221 577 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 RPL30P15-201ENST00000457129 321 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 TMEM251P1-201ENST00000503717 318 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 RNA5SP341-201ENST00000516261 117 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 COX6CP8-201ENST00000522620 226 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 LSM6P2-201ENST00000552208 177 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 MIR5680-201ENST00000577577 84 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 OR10AB1P-201ENST00000609613 938 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 U6.101-201ENST00000637707 76 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 PROS2P-201ENST00000474651 1951 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 MDM4-202ENST00000367180 547 ntTSL 3 BASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 RNU6-1081P-201ENST00000384537 107 ntBASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 AL031679.1-201ENST00000400616 525 ntBASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 OOSP1P1-201ENST00000423265 274 ntBASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 FABP5P14-201ENST00000437273 393 ntBASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 FTH1P24-201ENST00000503502 462 ntBASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 AC025465.3-201ENST00000510570 311 ntBASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 RNU6-714P-201ENST00000516963 103 ntBASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 AC022616.6-201ENST00000520479 119 ntBASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 OR4P1P-201ENST00000530808 1136 ntBASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 AC023157.2-201ENST00000540596 141 ntBASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 SNORD39.3-201ENST00000584451 71 ntBASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 MIR6128-201ENST00000615528 109 ntBASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 AC009237.17-201ENST00000618111 748 ntBASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 FTX_2.1-201ENST00000618816 94 ntBASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 uc_338.11-201ENST00000619132 160 ntBASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 AC011978.2-201ENST00000569835 2054 ntBASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
COL17A1Q9UMD9 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.52
COL17A1Q9UMD9 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
COL17A1Q9UMD9 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
COL17A1Q9UMD9 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.52
COL17A1Q9UMD9 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC5.59□□□□□ -1.52
COL17A1Q9UMD9 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
COL17A1Q9UMD9 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
COL17A1Q9UMD9 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
COL17A1Q9UMD9 MAPK10-253ENST00000641010 4072 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 RNU6-874P-201ENST00000362390 105 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 Y_RNA.46-201ENST00000362695 102 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 Y_RNA.339-201ENST00000365325 102 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 Y_RNA.350-201ENST00000365409 98 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 Y_RNA.615-201ENST00000410769 117 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 RPL37P10-201ENST00000412884 288 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 AC018865.2-201ENST00000423631 129 ntBASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 116.9 ms