Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 KC877373.1-201ENST00000479066 408 ntBASIC5.61□□□□□ -1.51
COL17A1Q9UMD9 AC098591.2-201ENST00000510152 315 ntBASIC5.61□□□□□ -1.51
COL17A1Q9UMD9 RNU2-53P-201ENST00000516257 147 ntBASIC5.61□□□□□ -1.51
COL17A1Q9UMD9 SNORD60.2-201ENST00000516883 86 ntBASIC5.61□□□□□ -1.51
COL17A1Q9UMD9 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC5.61□□□□□ -1.51
COL17A1Q9UMD9 FTH1P11-201ENST00000517577 551 ntBASIC5.61□□□□□ -1.51
COL17A1Q9UMD9 AC113195.1-201ENST00000579952 141 ntBASIC5.61□□□□□ -1.51
COL17A1Q9UMD9 MIR3128-201ENST00000581957 66 ntBASIC5.61□□□□□ -1.51
COL17A1Q9UMD9 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
COL17A1Q9UMD9 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
COL17A1Q9UMD9 MTND5P19-201ENST00000424872 1794 ntBASIC5.61□□□□□ -1.51
COL17A1Q9UMD9 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC5.61□□□□□ -1.51
COL17A1Q9UMD9 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL17A1Q9UMD9 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL17A1Q9UMD9 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 Y_RNA.60-201ENST00000362831 98 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 RNU6-662P-201ENST00000384253 104 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 RNU6-456P-201ENST00000384493 107 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 RNU6-952P-201ENST00000391164 108 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 RNU6-1158P-201ENST00000391167 107 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 MTATP6P18-201ENST00000417994 673 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 HSPE1P1-201ENST00000421494 318 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 RPS6P12-201ENST00000432491 726 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 RSU1P2-202ENST00000437884 485 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 SNORA71B-202ENST00000439232 272 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 BNIP3P2-201ENST00000441221 577 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 RPL30P15-201ENST00000457129 321 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 TMEM251P1-201ENST00000503717 318 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 RNA5SP341-201ENST00000516261 117 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 COX6CP8-201ENST00000522620 226 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 LSM6P2-201ENST00000552208 177 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 MIR5680-201ENST00000577577 84 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 OR10AB1P-201ENST00000609613 938 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 U6.101-201ENST00000637707 76 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 PROS2P-201ENST00000474651 1951 ntBASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL17A1Q9UMD9 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 MDM4-202ENST00000367180 547 ntTSL 3 BASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 RNU6-1081P-201ENST00000384537 107 ntBASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 AL031679.1-201ENST00000400616 525 ntBASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 OOSP1P1-201ENST00000423265 274 ntBASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 FABP5P14-201ENST00000437273 393 ntBASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 FTH1P24-201ENST00000503502 462 ntBASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 AC025465.3-201ENST00000510570 311 ntBASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 RNU6-714P-201ENST00000516963 103 ntBASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 AC022616.6-201ENST00000520479 119 ntBASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 OR4P1P-201ENST00000530808 1136 ntBASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 AC023157.2-201ENST00000540596 141 ntBASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 SNORD39.3-201ENST00000584451 71 ntBASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 MIR6128-201ENST00000615528 109 ntBASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 AC009237.17-201ENST00000618111 748 ntBASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 FTX_2.1-201ENST00000618816 94 ntBASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 uc_338.11-201ENST00000619132 160 ntBASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 AC011978.2-201ENST00000569835 2054 ntBASIC5.59□□□□□ -1.51
COL17A1Q9UMD9 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
COL17A1Q9UMD9 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.52
COL17A1Q9UMD9 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
COL17A1Q9UMD9 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
COL17A1Q9UMD9 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.52
COL17A1Q9UMD9 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC5.59□□□□□ -1.52
COL17A1Q9UMD9 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
COL17A1Q9UMD9 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
COL17A1Q9UMD9 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
COL17A1Q9UMD9 MAPK10-253ENST00000641010 4072 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 RNU6-874P-201ENST00000362390 105 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 Y_RNA.46-201ENST00000362695 102 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 Y_RNA.339-201ENST00000365325 102 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 Y_RNA.350-201ENST00000365409 98 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 Y_RNA.615-201ENST00000410769 117 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 RPL37P10-201ENST00000412884 288 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 AC018865.2-201ENST00000423631 129 ntBASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 10.9 ms