Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
VPS54Q9P1Q0 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC2.88□□□□□ -1.95
VPS54Q9P1Q0 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
VPS54Q9P1Q0 MIR518C-201ENST00000384822 101 ntBASIC2.88□□□□□ -1.95
VPS54Q9P1Q0 MIR27B-201ENST00000385129 97 ntBASIC2.88□□□□□ -1.95
VPS54Q9P1Q0 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC2.88□□□□□ -1.95
VPS54Q9P1Q0 AL512844.2-201ENST00000433990 593 ntBASIC2.88□□□□□ -1.95
VPS54Q9P1Q0 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC2.88□□□□□ -1.95
VPS54Q9P1Q0 RPL35AP22-201ENST00000436855 335 ntBASIC2.88□□□□□ -1.95
VPS54Q9P1Q0 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC2.88□□□□□ -1.95
VPS54Q9P1Q0 MTND5P2-201ENST00000442927 1142 ntBASIC2.88□□□□□ -1.95
VPS54Q9P1Q0 RNU6-420P-201ENST00000458780 107 ntBASIC2.88□□□□□ -1.95
VPS54Q9P1Q0 RPS20P20-201ENST00000460498 340 ntBASIC2.88□□□□□ -1.95
VPS54Q9P1Q0 AC126389.1-201ENST00000477436 290 ntBASIC2.88□□□□□ -1.95
VPS54Q9P1Q0 AL135752.1-201ENST00000479477 471 ntBASIC2.88□□□□□ -1.95
VPS54Q9P1Q0 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC2.88□□□□□ -1.95
VPS54Q9P1Q0 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC2.88□□□□□ -1.95
VPS54Q9P1Q0 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC2.88□□□□□ -1.95
VPS54Q9P1Q0 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC2.88□□□□□ -1.95
VPS54Q9P1Q0 AC234778.2-201ENST00000566241 354 ntBASIC2.88□□□□□ -1.95
VPS54Q9P1Q0 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC2.88□□□□□ -1.95
VPS54Q9P1Q0 MIR5092-201ENST00000583139 88 ntBASIC2.88□□□□□ -1.95
VPS54Q9P1Q0 TPMTP1-201ENST00000592307 737 ntBASIC2.88□□□□□ -1.95
VPS54Q9P1Q0 AC008751.2-201ENST00000597885 980 ntBASIC2.88□□□□□ -1.95
VPS54Q9P1Q0 AL353778.1-201ENST00000603149 408 ntBASIC2.88□□□□□ -1.95
VPS54Q9P1Q0 AC006023.1-201ENST00000603944 259 ntBASIC2.88□□□□□ -1.95
VPS54Q9P1Q0 AC091965.4-201ENST00000607691 587 ntBASIC2.88□□□□□ -1.95
VPS54Q9P1Q0 AC093838.1-201ENST00000613014 469 ntBASIC2.88□□□□□ -1.95
VPS54Q9P1Q0 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC2.88□□□□□ -1.95
VPS54Q9P1Q0 AP000676.3-201ENST00000623299 569 ntBASIC2.88□□□□□ -1.95
VPS54Q9P1Q0 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC2.88□□□□□ -1.95
VPS54Q9P1Q0 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC2.88□□□□□ -1.95
VPS54Q9P1Q0 NF1-214ENST00000490416 1329 ntTSL 3 BASIC2.88□□□□□ -1.95
VPS54Q9P1Q0 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.88□□□□□ -1.95
VPS54Q9P1Q0 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
VPS54Q9P1Q0 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
VPS54Q9P1Q0 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
VPS54Q9P1Q0 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
VPS54Q9P1Q0 RPS4XP8-201ENST00000402039 771 ntBASIC2.87□□□□□ -1.95
VPS54Q9P1Q0 RPL19P1-201ENST00000411635 428 ntBASIC2.87□□□□□ -1.95
VPS54Q9P1Q0 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC2.87□□□□□ -1.95
VPS54Q9P1Q0 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC2.87□□□□□ -1.95
VPS54Q9P1Q0 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC2.87□□□□□ -1.95
VPS54Q9P1Q0 AP1S2P1-201ENST00000457344 379 ntBASIC2.87□□□□□ -1.95
VPS54Q9P1Q0 LARP1BP2-201ENST00000486594 519 ntBASIC2.87□□□□□ -1.95
VPS54Q9P1Q0 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC2.87□□□□□ -1.95
VPS54Q9P1Q0 TBCAP3-201ENST00000512475 312 ntBASIC2.87□□□□□ -1.95
VPS54Q9P1Q0 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC2.87□□□□□ -1.95
VPS54Q9P1Q0 RNU6-1282P-201ENST00000516735 96 ntBASIC2.87□□□□□ -1.95
VPS54Q9P1Q0 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.87□□□□□ -1.95
VPS54Q9P1Q0 HSPE1P20-201ENST00000538133 289 ntBASIC2.87□□□□□ -1.95
VPS54Q9P1Q0 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
VPS54Q9P1Q0 HMGB1P14-201ENST00000557424 591 ntBASIC2.87□□□□□ -1.95
VPS54Q9P1Q0 AC027176.1-201ENST00000560204 514 ntBASIC2.87□□□□□ -1.95
VPS54Q9P1Q0 RPL23AP84-201ENST00000571193 464 ntBASIC2.87□□□□□ -1.95
VPS54Q9P1Q0 MIR4307-201ENST00000582802 84 ntBASIC2.87□□□□□ -1.95
VPS54Q9P1Q0 AF038458.1-201ENST00000588406 262 ntBASIC2.87□□□□□ -1.95
VPS54Q9P1Q0 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.87□□□□□ -1.95
VPS54Q9P1Q0 RPL23AP78-201ENST00000599928 470 ntBASIC2.87□□□□□ -1.95
VPS54Q9P1Q0 AC010620.2-201ENST00000600135 313 ntBASIC2.87□□□□□ -1.95
VPS54Q9P1Q0 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC2.87□□□□□ -1.95
VPS54Q9P1Q0 AL161629.2-201ENST00000615347 275 ntBASIC2.87□□□□□ -1.95
VPS54Q9P1Q0 AC010133.1-201ENST00000615809 842 ntBASIC2.87□□□□□ -1.95
VPS54Q9P1Q0 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC2.87□□□□□ -1.95
VPS54Q9P1Q0 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC2.87□□□□□ -1.95
VPS54Q9P1Q0 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.87□□□□□ -1.95
VPS54Q9P1Q0 AC006378.2-201ENST00000623178 2476 ntBASIC2.86□□□□□ -1.95
VPS54Q9P1Q0 AC138915.1-201ENST00000565427 1685 ntBASIC2.86□□□□□ -1.95
VPS54Q9P1Q0 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.86□□□□□ -1.95
VPS54Q9P1Q0 AL136360.1-201ENST00000503377 1900 ntBASIC2.86□□□□□ -1.95
VPS54Q9P1Q0 AC007785.2-201ENST00000598627 1916 ntBASIC2.86□□□□□ -1.95
VPS54Q9P1Q0 U3.12-201ENST00000364498 214 ntBASIC2.86□□□□□ -1.95
VPS54Q9P1Q0 RNU6-198P-201ENST00000384258 104 ntBASIC2.86□□□□□ -1.95
VPS54Q9P1Q0 MIR19A-201ENST00000384878 82 ntBASIC2.86□□□□□ -1.95
VPS54Q9P1Q0 FO393413.1-201ENST00000402892 195 ntBASIC2.86□□□□□ -1.95
VPS54Q9P1Q0 AL162578.1-201ENST00000406202 378 ntBASIC2.86□□□□□ -1.95
VPS54Q9P1Q0 TXNP7-201ENST00000406296 293 ntBASIC2.86□□□□□ -1.95
VPS54Q9P1Q0 RN7SKP140-201ENST00000411196 284 ntBASIC2.86□□□□□ -1.95
VPS54Q9P1Q0 RNA5SP492-201ENST00000411330 114 ntBASIC2.86□□□□□ -1.95
VPS54Q9P1Q0 VPS26BP1-201ENST00000417155 755 ntBASIC2.86□□□□□ -1.95
VPS54Q9P1Q0 LARP1BP3-201ENST00000437229 869 ntBASIC2.86□□□□□ -1.95
VPS54Q9P1Q0 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC2.86□□□□□ -1.95
VPS54Q9P1Q0 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC2.86□□□□□ -1.95
VPS54Q9P1Q0 AC055855.1-201ENST00000489563 579 ntBASIC2.86□□□□□ -1.95
VPS54Q9P1Q0 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
VPS54Q9P1Q0 RNU6-678P-201ENST00000516832 109 ntBASIC2.86□□□□□ -1.95
VPS54Q9P1Q0 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.86□□□□□ -1.95
VPS54Q9P1Q0 AC087373.1-201ENST00000524920 491 ntBASIC2.86□□□□□ -1.95
VPS54Q9P1Q0 MTATP6P15-201ENST00000527233 835 ntBASIC2.86□□□□□ -1.95
VPS54Q9P1Q0 AL133153.1-201ENST00000557756 303 ntBASIC2.86□□□□□ -1.95
VPS54Q9P1Q0 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.86□□□□□ -1.95
VPS54Q9P1Q0 AMZ2P1-203ENST00000565833 850 ntBASIC2.86□□□□□ -1.95
VPS54Q9P1Q0 AC063944.3-201ENST00000609969 533 ntBASIC2.86□□□□□ -1.95
VPS54Q9P1Q0 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC2.86□□□□□ -1.95
VPS54Q9P1Q0 AC013476.2-201ENST00000614456 459 ntBASIC2.86□□□□□ -1.95
VPS54Q9P1Q0 AC140725.3-201ENST00000616193 880 ntBASIC2.86□□□□□ -1.95
VPS54Q9P1Q0 AC091965.5-201ENST00000624785 342 ntBASIC2.86□□□□□ -1.95
VPS54Q9P1Q0 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC2.86□□□□□ -1.95
VPS54Q9P1Q0 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC2.86□□□□□ -1.95
VPS54Q9P1Q0 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 110.9 ms