Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 EEF1A1P41-201ENST00000414667 207 ntBASIC2.72□□□□□ -1.97
LIME1Q9H400 Z85995.1-201ENST00000415547 335 ntBASIC2.72□□□□□ -1.97
LIME1Q9H400 AL451054.2-201ENST00000420896 202 ntBASIC2.72□□□□□ -1.97
LIME1Q9H400 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC2.72□□□□□ -1.97
LIME1Q9H400 OOSP1P1-201ENST00000423265 274 ntBASIC2.72□□□□□ -1.97
LIME1Q9H400 AC019097.1-201ENST00000424783 735 ntBASIC2.72□□□□□ -1.97
LIME1Q9H400 USP12PX-201ENST00000432383 1057 ntBASIC2.72□□□□□ -1.97
LIME1Q9H400 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC2.72□□□□□ -1.97
LIME1Q9H400 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC2.72□□□□□ -1.97
LIME1Q9H400 AL360221.1-201ENST00000445989 335 ntBASIC2.72□□□□□ -1.97
LIME1Q9H400 AC020550.1-201ENST00000447385 163 ntBASIC2.72□□□□□ -1.97
LIME1Q9H400 Z99127.3-201ENST00000448158 395 ntBASIC2.72□□□□□ -1.97
LIME1Q9H400 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC2.72□□□□□ -1.97
LIME1Q9H400 RPS23P3-201ENST00000470993 430 ntBASIC2.72□□□□□ -1.97
LIME1Q9H400 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC2.72□□□□□ -1.97
LIME1Q9H400 RPL30P5-201ENST00000494923 336 ntBASIC2.72□□□□□ -1.97
LIME1Q9H400 AC010424.1-201ENST00000506336 297 ntBASIC2.72□□□□□ -1.97
LIME1Q9H400 AC091965.2-201ENST00000512324 613 ntBASIC2.72□□□□□ -1.97
LIME1Q9H400 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
LIME1Q9H400 RNA5SP217-201ENST00000515959 91 ntBASIC2.72□□□□□ -1.97
LIME1Q9H400 Y_RNA.672-201ENST00000516289 104 ntBASIC2.72□□□□□ -1.97
LIME1Q9H400 AC123904.3-201ENST00000547218 814 ntBASIC2.72□□□□□ -1.97
LIME1Q9H400 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC2.72□□□□□ -1.97
LIME1Q9H400 NDUFAF4P1-201ENST00000559425 519 ntBASIC2.72□□□□□ -1.97
LIME1Q9H400 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC2.72□□□□□ -1.97
LIME1Q9H400 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.72□□□□□ -1.97
LIME1Q9H400 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
LIME1Q9H400 AC064872.1-201ENST00000604823 1072 ntBASIC2.72□□□□□ -1.97
LIME1Q9H400 AC103710.2-201ENST00000609912 942 ntBASIC2.72□□□□□ -1.97
LIME1Q9H400 UBE2Q2P2-203ENST00000613592 761 ntBASIC2.72□□□□□ -1.97
LIME1Q9H400 SDR42E1P2-201ENST00000614861 481 ntBASIC2.72□□□□□ -1.97
LIME1Q9H400 AC010133.1-201ENST00000615809 842 ntBASIC2.72□□□□□ -1.97
LIME1Q9H400 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC2.72□□□□□ -1.97
LIME1Q9H400 AL136313.1-201ENST00000624804 202 ntBASIC2.72□□□□□ -1.97
LIME1Q9H400 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
LIME1Q9H400 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC2.72□□□□□ -1.97
LIME1Q9H400 AC093831.2-201ENST00000624393 3427 ntBASIC2.72□□□□□ -1.97
LIME1Q9H400 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC2.72□□□□□ -1.97
LIME1Q9H400 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC2.71□□□□□ -1.97
LIME1Q9H400 TEX21P-201ENST00000447107 1476 ntBASIC2.71□□□□□ -1.97
LIME1Q9H400 ANKRD26P2-201ENST00000445530 1710 ntBASIC2.71□□□□□ -1.98
LIME1Q9H400 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC2.71□□□□□ -1.98
LIME1Q9H400 Y_RNA.51-201ENST00000362725 102 ntBASIC2.71□□□□□ -1.98
LIME1Q9H400 SNORA71.1-201ENST00000364523 117 ntBASIC2.71□□□□□ -1.98
LIME1Q9H400 RNY4P16-201ENST00000364768 94 ntBASIC2.71□□□□□ -1.98
LIME1Q9H400 SNORA75-201ENST00000384158 137 ntBASIC2.71□□□□□ -1.98
LIME1Q9H400 SNORA7.4-201ENST00000384249 137 ntBASIC2.71□□□□□ -1.98
LIME1Q9H400 SNORA54-201ENST00000384281 123 ntBASIC2.71□□□□□ -1.98
LIME1Q9H400 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
LIME1Q9H400 AL139095.1-201ENST00000404326 391 ntBASIC2.71□□□□□ -1.98
LIME1Q9H400 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC2.71□□□□□ -1.98
LIME1Q9H400 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC2.71□□□□□ -1.98
LIME1Q9H400 AL365338.1-201ENST00000422282 858 ntBASIC2.71□□□□□ -1.98
LIME1Q9H400 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC2.71□□□□□ -1.98
LIME1Q9H400 AL356867.1-201ENST00000429623 299 ntBASIC2.71□□□□□ -1.98
LIME1Q9H400 AC022018.1-201ENST00000430685 241 ntBASIC2.71□□□□□ -1.98
LIME1Q9H400 AC009961.2-201ENST00000435771 251 ntBASIC2.71□□□□□ -1.98
LIME1Q9H400 RPL32P28-201ENST00000443577 397 ntBASIC2.71□□□□□ -1.98
LIME1Q9H400 USP9YP29-201ENST00000445112 563 ntBASIC2.71□□□□□ -1.98
LIME1Q9H400 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
LIME1Q9H400 SSXP4-201ENST00000451349 245 ntBASIC2.71□□□□□ -1.98
LIME1Q9H400 TEX41-209ENST00000451478 452 ntTSL 2 BASIC2.71□□□□□ -1.98
LIME1Q9H400 RGS5-217ENST00000451759 835 ntTSL 3 BASIC2.71□□□□□ -1.98
LIME1Q9H400 AL033528.1-201ENST00000453780 140 ntBASIC2.71□□□□□ -1.98
LIME1Q9H400 RN7SL75P-201ENST00000461926 281 ntBASIC2.71□□□□□ -1.98
LIME1Q9H400 AP002884.2-201ENST00000471647 395 ntBASIC2.71□□□□□ -1.98
LIME1Q9H400 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC2.71□□□□□ -1.98
LIME1Q9H400 RPS20P22-201ENST00000473700 357 ntBASIC2.71□□□□□ -1.98
LIME1Q9H400 AC010631.1-201ENST00000474150 156 ntBASIC2.71□□□□□ -1.98
LIME1Q9H400 RPS29P26-201ENST00000477483 171 ntBASIC2.71□□□□□ -1.98
LIME1Q9H400 LARP1BP2-201ENST00000486594 519 ntBASIC2.71□□□□□ -1.98
LIME1Q9H400 AL049874.1-201ENST00000489560 388 ntBASIC2.71□□□□□ -1.98
LIME1Q9H400 RN7SKP132-201ENST00000516001 208 ntBASIC2.71□□□□□ -1.98
LIME1Q9H400 RNU6-840P-201ENST00000517275 65 ntBASIC2.71□□□□□ -1.98
LIME1Q9H400 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC2.71□□□□□ -1.98
LIME1Q9H400 AP000873.5-201ENST00000533906 236 ntBASIC2.71□□□□□ -1.98
LIME1Q9H400 AC124947.2-202ENST00000552735 133 ntBASIC2.71□□□□□ -1.98
LIME1Q9H400 AL355836.1-201ENST00000555951 870 ntBASIC2.71□□□□□ -1.98
LIME1Q9H400 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC2.71□□□□□ -1.98
LIME1Q9H400 AF038458.1-201ENST00000588406 262 ntBASIC2.71□□□□□ -1.98
LIME1Q9H400 AC103710.1-201ENST00000610003 901 ntBASIC2.71□□□□□ -1.98
LIME1Q9H400 AP001506.1-201ENST00000615444 211 ntBASIC2.71□□□□□ -1.98
LIME1Q9H400 AC091903.1-201ENST00000624322 454 ntBASIC2.71□□□□□ -1.98
LIME1Q9H400 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC2.71□□□□□ -1.98
LIME1Q9H400 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.7□□□□□ -1.98
LIME1Q9H400 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC2.7□□□□□ -1.98
LIME1Q9H400 AL355596.1-201ENST00000565399 3996 ntBASIC2.7□□□□□ -1.98
LIME1Q9H400 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
LIME1Q9H400 RNU5E-1-201ENST00000362477 120 ntBASIC2.7□□□□□ -1.98
LIME1Q9H400 U8.3-201ENST00000363321 132 ntBASIC2.7□□□□□ -1.98
LIME1Q9H400 Y_RNA.201-201ENST00000364052 96 ntBASIC2.7□□□□□ -1.98
LIME1Q9H400 RNY3P13-201ENST00000365542 102 ntBASIC2.7□□□□□ -1.98
LIME1Q9H400 SNORA40.3-201ENST00000390964 122 ntBASIC2.7□□□□□ -1.98
LIME1Q9H400 RPL23AP32-201ENST00000395315 459 ntBASIC2.7□□□□□ -1.98
LIME1Q9H400 OFD1P1Y-201ENST00000411756 1225 ntBASIC2.7□□□□□ -1.98
LIME1Q9H400 AL513331.1-201ENST00000411908 397 ntBASIC2.7□□□□□ -1.98
LIME1Q9H400 ELOCP17-201ENST00000414751 326 ntBASIC2.7□□□□□ -1.98
LIME1Q9H400 SPA17P1-201ENST00000416656 452 ntBASIC2.7□□□□□ -1.98
LIME1Q9H400 AL589872.1-201ENST00000426602 288 ntBASIC2.7□□□□□ -1.98
LIME1Q9H400 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC2.7□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms