Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 RNU6-946P-201ENST00000383878 107 ntBASIC4.28□□□□□ -1.72
CHMP4CQ96CF2 MIR454-201ENST00000390180 115 ntBASIC4.28□□□□□ -1.72
CHMP4CQ96CF2 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CHMP4CQ96CF2 RPS4XP8-201ENST00000402039 771 ntBASIC4.28□□□□□ -1.72
CHMP4CQ96CF2 U3.39-201ENST00000408569 239 ntBASIC4.28□□□□□ -1.72
CHMP4CQ96CF2 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC4.28□□□□□ -1.72
CHMP4CQ96CF2 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC4.28□□□□□ -1.72
CHMP4CQ96CF2 ZNF90P2-204ENST00000419323 1075 ntBASIC4.28□□□□□ -1.72
CHMP4CQ96CF2 AC245054.1-201ENST00000420944 258 ntBASIC4.28□□□□□ -1.72
CHMP4CQ96CF2 AL353193.1-201ENST00000421444 268 ntBASIC4.28□□□□□ -1.72
CHMP4CQ96CF2 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
CHMP4CQ96CF2 NDUFB4P7-201ENST00000423198 363 ntBASIC4.28□□□□□ -1.72
CHMP4CQ96CF2 USP9YP18-201ENST00000425912 695 ntBASIC4.28□□□□□ -1.72
CHMP4CQ96CF2 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC4.28□□□□□ -1.72
CHMP4CQ96CF2 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC4.28□□□□□ -1.72
CHMP4CQ96CF2 RPS15AP9-201ENST00000439856 381 ntBASIC4.28□□□□□ -1.72
CHMP4CQ96CF2 RPS3AP46-201ENST00000448352 682 ntBASIC4.28□□□□□ -1.72
CHMP4CQ96CF2 PRSS3P4-201ENST00000453323 162 ntBASIC4.28□□□□□ -1.72
CHMP4CQ96CF2 HMGN2P16-201ENST00000456802 261 ntBASIC4.28□□□□□ -1.72
CHMP4CQ96CF2 RPS23P3-201ENST00000470993 430 ntBASIC4.28□□□□□ -1.72
CHMP4CQ96CF2 AC025518.1-201ENST00000479856 347 ntBASIC4.28□□□□□ -1.72
CHMP4CQ96CF2 ENSA-210ENST00000503241 574 ntTSL 3 BASIC4.28□□□□□ -1.72
CHMP4CQ96CF2 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC4.28□□□□□ -1.72
CHMP4CQ96CF2 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC4.28□□□□□ -1.72
CHMP4CQ96CF2 ARL4AP2-201ENST00000507378 601 ntBASIC4.28□□□□□ -1.72
CHMP4CQ96CF2 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC4.28□□□□□ -1.72
CHMP4CQ96CF2 RNU6-718P-201ENST00000516166 105 ntBASIC4.28□□□□□ -1.72
CHMP4CQ96CF2 SNORD27.1-201ENST00000516319 72 ntBASIC4.28□□□□□ -1.72
CHMP4CQ96CF2 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC4.28□□□□□ -1.72
CHMP4CQ96CF2 AL512310.1-201ENST00000548639 172 ntBASIC4.28□□□□□ -1.72
CHMP4CQ96CF2 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC4.28□□□□□ -1.72
CHMP4CQ96CF2 AP001094.1-201ENST00000579805 193 ntBASIC4.28□□□□□ -1.72
CHMP4CQ96CF2 DLEU1_1.1-201ENST00000618107 190 ntBASIC4.28□□□□□ -1.72
CHMP4CQ96CF2 AP003355.3-201ENST00000623465 114 ntBASIC4.28□□□□□ -1.72
CHMP4CQ96CF2 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
CHMP4CQ96CF2 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.73
CHMP4CQ96CF2 HSP90AA4P-202ENST00000506915 2228 ntBASIC4.27□□□□□ -1.73
CHMP4CQ96CF2 MTCO1P12-201ENST00000414273 1543 ntBASIC4.27□□□□□ -1.73
CHMP4CQ96CF2 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC4.27□□□□□ -1.73
CHMP4CQ96CF2 RNU6-1322P-201ENST00000364309 107 ntBASIC4.27□□□□□ -1.73
CHMP4CQ96CF2 Y_RNA.333-201ENST00000365274 102 ntBASIC4.27□□□□□ -1.73
CHMP4CQ96CF2 TRAPPC2P4-201ENST00000421750 331 ntBASIC4.27□□□□□ -1.73
CHMP4CQ96CF2 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CHMP4CQ96CF2 RPL7P54-201ENST00000438336 674 ntBASIC4.27□□□□□ -1.73
CHMP4CQ96CF2 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC4.27□□□□□ -1.73
CHMP4CQ96CF2 DDX3P2-201ENST00000446138 111 ntBASIC4.27□□□□□ -1.73
CHMP4CQ96CF2 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC4.27□□□□□ -1.73
CHMP4CQ96CF2 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CHMP4CQ96CF2 FABP5P13-201ENST00000452144 328 ntBASIC4.27□□□□□ -1.73
CHMP4CQ96CF2 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC4.27□□□□□ -1.73
CHMP4CQ96CF2 RNU7-63P-201ENST00000459054 62 ntBASIC4.27□□□□□ -1.73
CHMP4CQ96CF2 AC006512.1-201ENST00000468816 291 ntBASIC4.27□□□□□ -1.73
CHMP4CQ96CF2 AC106707.2-201ENST00000484182 374 ntBASIC4.27□□□□□ -1.73
CHMP4CQ96CF2 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC4.27□□□□□ -1.73
CHMP4CQ96CF2 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC4.27□□□□□ -1.73
CHMP4CQ96CF2 AC011352.1-201ENST00000512300 793 ntBASIC4.27□□□□□ -1.73
CHMP4CQ96CF2 RN7SKP18-201ENST00000516005 275 ntBASIC4.27□□□□□ -1.73
CHMP4CQ96CF2 Y_RNA.693-201ENST00000516641 110 ntBASIC4.27□□□□□ -1.73
CHMP4CQ96CF2 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC4.27□□□□□ -1.73
CHMP4CQ96CF2 OR5B10P-201ENST00000532869 642 ntBASIC4.27□□□□□ -1.73
CHMP4CQ96CF2 AC007458.1-201ENST00000542812 373 ntBASIC4.27□□□□□ -1.73
CHMP4CQ96CF2 MIR4738-201ENST00000579134 87 ntBASIC4.27□□□□□ -1.73
CHMP4CQ96CF2 AC104763.2-201ENST00000604179 382 ntBASIC4.27□□□□□ -1.73
CHMP4CQ96CF2 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC4.27□□□□□ -1.73
CHMP4CQ96CF2 AC007619.2-201ENST00000605743 379 ntBASIC4.27□□□□□ -1.73
CHMP4CQ96CF2 AP001330.5-201ENST00000607176 411 ntBASIC4.27□□□□□ -1.73
CHMP4CQ96CF2 U6.114-201ENST00000636407 96 ntBASIC4.27□□□□□ -1.73
CHMP4CQ96CF2 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC4.27□□□□□ -1.73
CHMP4CQ96CF2 MTND5P17-201ENST00000418405 1603 ntBASIC4.27□□□□□ -1.73
CHMP4CQ96CF2 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC4.27□□□□□ -1.73
CHMP4CQ96CF2 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC4.27□□□□□ -1.73
CHMP4CQ96CF2 ANKRD36BP1-202ENST00000604892 1417 ntBASIC4.27□□□□□ -1.73
CHMP4CQ96CF2 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
CHMP4CQ96CF2 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC4.26□□□□□ -1.73
CHMP4CQ96CF2 AP001148.1-201ENST00000624124 2359 ntBASIC4.26□□□□□ -1.73
CHMP4CQ96CF2 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CHMP4CQ96CF2 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
CHMP4CQ96CF2 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
CHMP4CQ96CF2 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CHMP4CQ96CF2 RNA5SP42-201ENST00000364278 115 ntBASIC4.26□□□□□ -1.73
CHMP4CQ96CF2 SNORA62.1-201ENST00000364287 154 ntBASIC4.26□□□□□ -1.73
CHMP4CQ96CF2 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CHMP4CQ96CF2 RNU6-606P-201ENST00000384721 111 ntBASIC4.26□□□□□ -1.73
CHMP4CQ96CF2 MIR449B-201ENST00000384995 97 ntBASIC4.26□□□□□ -1.73
CHMP4CQ96CF2 RNU6-780P-201ENST00000391030 104 ntBASIC4.26□□□□□ -1.73
CHMP4CQ96CF2 AC068050.1-201ENST00000394891 380 ntBASIC4.26□□□□□ -1.73
CHMP4CQ96CF2 CIR1P3-201ENST00000405137 479 ntBASIC4.26□□□□□ -1.73
CHMP4CQ96CF2 BTF3P7-201ENST00000407097 488 ntBASIC4.26□□□□□ -1.73
CHMP4CQ96CF2 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CHMP4CQ96CF2 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC4.26□□□□□ -1.73
CHMP4CQ96CF2 OR51A5P-201ENST00000415429 942 ntBASIC4.26□□□□□ -1.73
CHMP4CQ96CF2 MRPL50P2-201ENST00000416821 482 ntBASIC4.26□□□□□ -1.73
CHMP4CQ96CF2 YPEL5P1-201ENST00000419731 367 ntBASIC4.26□□□□□ -1.73
CHMP4CQ96CF2 ELOCP14-201ENST00000428070 331 ntBASIC4.26□□□□□ -1.73
CHMP4CQ96CF2 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC4.26□□□□□ -1.73
CHMP4CQ96CF2 ELOCP7-201ENST00000439968 331 ntBASIC4.26□□□□□ -1.73
CHMP4CQ96CF2 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC4.26□□□□□ -1.73
CHMP4CQ96CF2 RNU7-182P-201ENST00000459009 62 ntBASIC4.26□□□□□ -1.73
CHMP4CQ96CF2 RNU6-953P-201ENST00000459154 107 ntBASIC4.26□□□□□ -1.73
CHMP4CQ96CF2 MRPS17P3-201ENST00000465453 385 ntBASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 112.3 ms