Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 MIR412-201ENST00000362142 91 ntBASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 RNU6-212P-201ENST00000362642 104 ntBASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 Y_RNA.48-201ENST00000362710 103 ntBASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 Y_RNA.64-201ENST00000362845 102 ntBASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 Y_RNA.471-201ENST00000384312 102 ntBASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 RNU6-33P-201ENST00000384793 107 ntBASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 RNU1-82P-201ENST00000390851 165 ntBASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 AL590762.2-201ENST00000395798 571 ntBASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 RN7SKP125-201ENST00000410481 302 ntBASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 AC006946.1-201ENST00000429106 328 ntBASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 TDGF1P1-201ENST00000445734 527 ntBASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 NDUFB1P2-201ENST00000449477 176 ntBASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 AC022493.1-201ENST00000492984 337 ntBASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 RNU1-86P-201ENST00000516108 154 ntBASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 SNORA31.6-201ENST00000516241 130 ntBASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 RNU1-107P-201ENST00000516617 154 ntBASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 RNU6-182P-201ENST00000516970 105 ntBASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 MIR4436B2-201ENST00000581415 91 ntBASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 MIR4436B1-201ENST00000583272 91 ntBASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 RN7SL435P-201ENST00000584418 282 ntBASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 MIR3976-201ENST00000606807 139 ntBASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 AC004852.3-201ENST00000614131 326 ntBASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 AL445487.1-201ENST00000415694 1580 ntBASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 RPL9P7-201ENST00000330965 580 ntBASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 Y_RNA.555-201ENST00000384673 110 ntBASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 MTCYBP2-201ENST00000407745 171 ntBASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 RNU2-71P-201ENST00000411395 189 ntBASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 RPL36AP10-201ENST00000421785 322 ntBASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 AL590135.1-201ENST00000422215 156 ntBASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 RPL21P91-201ENST00000429231 479 ntBASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 AC092573.2-201ENST00000434546 243 ntBASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 MTND2P29-201ENST00000438595 412 ntBASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 AL513043.1-201ENST00000439124 535 ntBASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 RPL9P9-202ENST00000466501 579 ntBASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 Y_RNA.713-201ENST00000517013 96 ntBASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 RNU4-60P-201ENST00000517239 135 ntBASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 AC051619.2-201ENST00000559063 397 ntBASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 AC022968.1-201ENST00000567372 442 ntBASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 MIR3934-201ENST00000579806 107 ntBASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 MIR4737-201ENST00000583979 81 ntBASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 AL158827.2-201ENST00000602494 330 ntBASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 MIR8076-201ENST00000611401 83 ntBASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 MIR8069-1-201ENST00000616627 86 ntBASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 MIR8069-2-201ENST00000621412 86 ntBASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 AL691447.3-201ENST00000635020 330 ntBASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 NEAT1-202ENST00000501122 22743 ntBASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
UBE3DQ7Z6J8 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.5□□□□□ -1.69
UBE3DQ7Z6J8 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
UBE3DQ7Z6J8 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
UBE3DQ7Z6J8 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC4.5□□□□□ -1.69
UBE3DQ7Z6J8 MTND5P9-201ENST00000503854 1755 ntBASIC4.5□□□□□ -1.69
UBE3DQ7Z6J8 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC4.5□□□□□ -1.69
UBE3DQ7Z6J8 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
UBE3DQ7Z6J8 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.5□□□□□ -1.69
UBE3DQ7Z6J8 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
UBE3DQ7Z6J8 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.5□□□□□ -1.69
UBE3DQ7Z6J8 MIR335-201ENST00000362173 94 ntBASIC4.5□□□□□ -1.69
UBE3DQ7Z6J8 RNU5A-1-201ENST00000362698 116 ntBASIC4.5□□□□□ -1.69
UBE3DQ7Z6J8 RNU6-1167P-201ENST00000363227 94 ntBASIC4.5□□□□□ -1.69
UBE3DQ7Z6J8 RNU1-83P-201ENST00000363426 164 ntBASIC4.5□□□□□ -1.69
UBE3DQ7Z6J8 RNU6-173P-201ENST00000364215 104 ntBASIC4.5□□□□□ -1.69
UBE3DQ7Z6J8 Y_RNA.416-201ENST00000384014 113 ntBASIC4.5□□□□□ -1.69
UBE3DQ7Z6J8 Y_RNA.533-201ENST00000384596 114 ntBASIC4.5□□□□□ -1.69
UBE3DQ7Z6J8 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
UBE3DQ7Z6J8 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
UBE3DQ7Z6J8 Y_RNA.592-201ENST00000410274 109 ntBASIC4.5□□□□□ -1.69
UBE3DQ7Z6J8 RN7SKP100-201ENST00000411258 284 ntBASIC4.5□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 179.7 ms