Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AC104108.1-201ENST00000509930 412 ntBASIC1.66□□□□□ -2.14
USP54Q70EL1 AC008837.2-201ENST00000513076 418 ntBASIC1.66□□□□□ -2.14
USP54Q70EL1 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC1.66□□□□□ -2.14
USP54Q70EL1 AP005660.1-201ENST00000522972 293 ntBASIC1.66□□□□□ -2.14
USP54Q70EL1 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC1.66□□□□□ -2.14
USP54Q70EL1 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC1.66□□□□□ -2.14
USP54Q70EL1 AL449363.1-201ENST00000617815 186 ntBASIC1.66□□□□□ -2.14
USP54Q70EL1 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.14
USP54Q70EL1 AL365496.1-201ENST00000426885 215 ntBASIC1.65□□□□□ -2.15
USP54Q70EL1 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC1.65□□□□□ -2.15
USP54Q70EL1 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.65□□□□□ -2.15
USP54Q70EL1 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC1.65□□□□□ -2.15
USP54Q70EL1 AC234775.1-201ENST00000454247 670 ntBASIC1.65□□□□□ -2.15
USP54Q70EL1 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC1.65□□□□□ -2.15
USP54Q70EL1 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC1.65□□□□□ -2.15
USP54Q70EL1 RPS15AP34-201ENST00000487776 387 ntBASIC1.65□□□□□ -2.15
USP54Q70EL1 RPS3AP22-201ENST00000488297 769 ntBASIC1.65□□□□□ -2.15
USP54Q70EL1 AC022616.2-201ENST00000523185 300 ntBASIC1.65□□□□□ -2.15
USP54Q70EL1 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC1.65□□□□□ -2.15
USP54Q70EL1 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC1.65□□□□□ -2.15
USP54Q70EL1 AC097372.4-201ENST00000625025 466 ntBASIC1.65□□□□□ -2.15
USP54Q70EL1 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
USP54Q70EL1 AL022578.1-201ENST00000439330 1433 ntBASIC1.65□□□□□ -2.15
USP54Q70EL1 RNU1-105P-201ENST00000363470 161 ntBASIC1.64□□□□□ -2.15
USP54Q70EL1 RNU6-1074P-201ENST00000383995 104 ntBASIC1.64□□□□□ -2.15
USP54Q70EL1 SNORA51.12-201ENST00000384448 134 ntBASIC1.64□□□□□ -2.15
USP54Q70EL1 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC1.64□□□□□ -2.15
USP54Q70EL1 RNU4ATAC16P-201ENST00000408512 126 ntBASIC1.64□□□□□ -2.15
USP54Q70EL1 HMGB3P31-201ENST00000413333 595 ntBASIC1.64□□□□□ -2.15
USP54Q70EL1 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC1.64□□□□□ -2.15
USP54Q70EL1 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC1.64□□□□□ -2.15
USP54Q70EL1 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC1.64□□□□□ -2.15
USP54Q70EL1 BMI1P1-201ENST00000445879 941 ntBASIC1.64□□□□□ -2.15
USP54Q70EL1 snoU13.28-201ENST00000459235 104 ntBASIC1.64□□□□□ -2.15
USP54Q70EL1 AC096751.1-202ENST00000502691 1067 ntBASIC1.64□□□□□ -2.15
USP54Q70EL1 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC1.64□□□□□ -2.15
USP54Q70EL1 MED28P6-201ENST00000558776 231 ntBASIC1.64□□□□□ -2.15
USP54Q70EL1 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.64□□□□□ -2.15
USP54Q70EL1 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC1.64□□□□□ -2.15
USP54Q70EL1 MIR421-201ENST00000365696 85 ntBASIC1.64□□□□□ -2.15
USP54Q70EL1 MIR520E-201ENST00000384867 87 ntBASIC1.64□□□□□ -2.15
USP54Q70EL1 RNU6-712P-201ENST00000410558 100 ntBASIC1.64□□□□□ -2.15
USP54Q70EL1 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
USP54Q70EL1 RNF2P1-201ENST00000442955 1010 ntBASIC1.64□□□□□ -2.15
USP54Q70EL1 AL139109.1-201ENST00000455491 297 ntBASIC1.64□□□□□ -2.15
USP54Q70EL1 RPS20P24-201ENST00000457473 361 ntBASIC1.64□□□□□ -2.15
USP54Q70EL1 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC1.64□□□□□ -2.15
USP54Q70EL1 AC115989.2-201ENST00000578640 563 ntBASIC1.64□□□□□ -2.15
USP54Q70EL1 AC007229.1-201ENST00000590455 412 ntBASIC1.64□□□□□ -2.15
USP54Q70EL1 AC079791.1-201ENST00000605356 973 ntBASIC1.64□□□□□ -2.15
USP54Q70EL1 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC1.64□□□□□ -2.15
USP54Q70EL1 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.64□□□□□ -2.15
USP54Q70EL1 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC1.64□□□□□ -2.15
USP54Q70EL1 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.63□□□□□ -2.15
USP54Q70EL1 RNU6-1072P-201ENST00000384703 107 ntBASIC1.63□□□□□ -2.15
USP54Q70EL1 RNU6-443P-201ENST00000384780 107 ntBASIC1.63□□□□□ -2.15
USP54Q70EL1 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC1.63□□□□□ -2.15
USP54Q70EL1 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.63□□□□□ -2.15
USP54Q70EL1 AC092745.2-202ENST00000411880 369 ntBASIC1.63□□□□□ -2.15
USP54Q70EL1 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
USP54Q70EL1 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC1.63□□□□□ -2.15
USP54Q70EL1 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC1.63□□□□□ -2.15
USP54Q70EL1 RNA5SP471-201ENST00000516971 106 ntBASIC1.63□□□□□ -2.15
USP54Q70EL1 HMGB1P46-201ENST00000520062 610 ntBASIC1.63□□□□□ -2.15
USP54Q70EL1 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC1.63□□□□□ -2.15
USP54Q70EL1 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC1.63□□□□□ -2.15
USP54Q70EL1 FAM60BP-201ENST00000578364 658 ntBASIC1.63□□□□□ -2.15
USP54Q70EL1 AC073413.2-201ENST00000604332 360 ntBASIC1.63□□□□□ -2.15
USP54Q70EL1 AC025016.1-201ENST00000616746 682 ntBASIC1.63□□□□□ -2.15
USP54Q70EL1 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC1.63□□□□□ -2.15
USP54Q70EL1 AL109659.3-201ENST00000624985 950 ntBASIC1.63□□□□□ -2.15
USP54Q70EL1 AC130650.2-201ENST00000618736 2403 ntBASIC1.63□□□□□ -2.15
USP54Q70EL1 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC1.63□□□□□ -2.15
USP54Q70EL1 AC087359.1-201ENST00000508335 1740 ntBASIC1.63□□□□□ -2.15
USP54Q70EL1 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
USP54Q70EL1 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC1.62□□□□□ -2.15
USP54Q70EL1 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
USP54Q70EL1 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC1.62□□□□□ -2.15
USP54Q70EL1 RNU6-1197P-201ENST00000391183 107 ntBASIC1.62□□□□□ -2.15
USP54Q70EL1 RNU6-272P-201ENST00000411028 104 ntBASIC1.62□□□□□ -2.15
USP54Q70EL1 AC010385.1-201ENST00000412374 256 ntBASIC1.62□□□□□ -2.15
USP54Q70EL1 AL356320.2-201ENST00000417263 507 ntBASIC1.62□□□□□ -2.15
USP54Q70EL1 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC1.62□□□□□ -2.15
USP54Q70EL1 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC1.62□□□□□ -2.15
USP54Q70EL1 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC1.62□□□□□ -2.15
USP54Q70EL1 AC009296.1-201ENST00000443146 155 ntBASIC1.62□□□□□ -2.15
USP54Q70EL1 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC1.62□□□□□ -2.15
USP54Q70EL1 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
USP54Q70EL1 ARL2BPP4-201ENST00000506854 471 ntBASIC1.62□□□□□ -2.15
USP54Q70EL1 LTV1P1-201ENST00000510683 1237 ntBASIC1.62□□□□□ -2.15
USP54Q70EL1 AL359273.1-201ENST00000510918 627 ntBASIC1.62□□□□□ -2.15
USP54Q70EL1 RNU6-488P-201ENST00000515918 99 ntBASIC1.62□□□□□ -2.15
USP54Q70EL1 RNU6-889P-201ENST00000517189 103 ntBASIC1.62□□□□□ -2.15
USP54Q70EL1 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC1.62□□□□□ -2.15
USP54Q70EL1 AC022634.1-201ENST00000520765 532 ntBASIC1.62□□□□□ -2.15
USP54Q70EL1 GLYCAM1-201ENST00000546596 285 ntBASIC1.62□□□□□ -2.15
USP54Q70EL1 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC1.62□□□□□ -2.15
USP54Q70EL1 AC068135.2-201ENST00000569293 1028 ntBASIC1.62□□□□□ -2.15
USP54Q70EL1 MIR3117-201ENST00000584034 78 ntBASIC1.62□□□□□ -2.15
USP54Q70EL1 AP002826.1-201ENST00000608835 315 ntBASIC1.62□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms