Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC1.43□□□□□ -2.18
CHD3Q12873 WISP1-OT1-201ENST00000602893 642 ntBASIC1.43□□□□□ -2.18
CHD3Q12873 uc_338.5-201ENST00000611839 155 ntBASIC1.43□□□□□ -2.18
CHD3Q12873 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.42□□□□□ -2.18
CHD3Q12873 MTCO3P12-201ENST00000416718 547 ntBASIC1.42□□□□□ -2.18
CHD3Q12873 RPS3AP9-201ENST00000417027 792 ntBASIC1.42□□□□□ -2.18
CHD3Q12873 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC1.42□□□□□ -2.18
CHD3Q12873 MTCO2P9-201ENST00000503214 694 ntBASIC1.42□□□□□ -2.18
CHD3Q12873 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC1.42□□□□□ -2.18
CHD3Q12873 HSBP1P1-201ENST00000555205 166 ntBASIC1.42□□□□□ -2.18
CHD3Q12873 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC1.42□□□□□ -2.18
CHD3Q12873 HSPE1P7-201ENST00000604681 321 ntBASIC1.42□□□□□ -2.18
CHD3Q12873 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC1.42□□□□□ -2.18
CHD3Q12873 Y_RNA.112-201ENST00000363250 102 ntBASIC1.42□□□□□ -2.18
CHD3Q12873 AL512604.1-201ENST00000404812 257 ntBASIC1.42□□□□□ -2.18
CHD3Q12873 RNU6-272P-201ENST00000411028 104 ntBASIC1.42□□□□□ -2.18
CHD3Q12873 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC1.42□□□□□ -2.18
CHD3Q12873 MTND4LP10-201ENST00000435146 291 ntBASIC1.42□□□□□ -2.18
CHD3Q12873 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC1.42□□□□□ -2.18
CHD3Q12873 ARPC3P1-201ENST00000437218 533 ntBASIC1.42□□□□□ -2.18
CHD3Q12873 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC1.42□□□□□ -2.18
CHD3Q12873 BMI1P1-201ENST00000445879 941 ntBASIC1.42□□□□□ -2.18
CHD3Q12873 OR6K5P-201ENST00000447050 945 ntBASIC1.42□□□□□ -2.18
CHD3Q12873 HMGN3P1-201ENST00000453847 193 ntBASIC1.42□□□□□ -2.18
CHD3Q12873 SNORD121B-201ENST00000458838 81 ntBASIC1.42□□□□□ -2.18
CHD3Q12873 RPS15AP17-201ENST00000470598 390 ntBASIC1.42□□□□□ -2.18
CHD3Q12873 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC1.42□□□□□ -2.18
CHD3Q12873 RPS27P23-201ENST00000487608 251 ntBASIC1.42□□□□□ -2.18
CHD3Q12873 AC109464.2-201ENST00000510242 943 ntBASIC1.42□□□□□ -2.18
CHD3Q12873 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC1.42□□□□□ -2.18
CHD3Q12873 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.42□□□□□ -2.18
CHD3Q12873 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC1.42□□□□□ -2.18
CHD3Q12873 AC103987.3-201ENST00000582071 292 ntBASIC1.42□□□□□ -2.18
CHD3Q12873 RN7SL622P-201ENST00000585292 275 ntBASIC1.42□□□□□ -2.18
CHD3Q12873 AC098848.2-201ENST00000588023 330 ntBASIC1.42□□□□□ -2.18
CHD3Q12873 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC1.42□□□□□ -2.18
CHD3Q12873 AL355297.2-201ENST00000604792 129 ntBASIC1.42□□□□□ -2.18
CHD3Q12873 AL512598.1-201ENST00000610158 273 ntBASIC1.42□□□□□ -2.18
CHD3Q12873 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC1.42□□□□□ -2.18
CHD3Q12873 AC092608.3-201ENST00000625017 386 ntBASIC1.42□□□□□ -2.18
CHD3Q12873 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
CHD3Q12873 MTCO1P4-201ENST00000520516 1409 ntBASIC1.41□□□□□ -2.18
CHD3Q12873 RNA5SP258-201ENST00000362750 119 ntBASIC1.41□□□□□ -2.18
CHD3Q12873 RNU6-921P-201ENST00000384361 107 ntBASIC1.41□□□□□ -2.18
CHD3Q12873 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC1.41□□□□□ -2.18
CHD3Q12873 USP9YP10-201ENST00000454868 628 ntBASIC1.41□□□□□ -2.18
CHD3Q12873 HMGB3P17-201ENST00000504195 649 ntBASIC1.41□□□□□ -2.18
CHD3Q12873 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.41□□□□□ -2.18
CHD3Q12873 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC1.41□□□□□ -2.18
CHD3Q12873 NDUFB4P2-201ENST00000509515 391 ntBASIC1.41□□□□□ -2.18
CHD3Q12873 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC1.41□□□□□ -2.18
CHD3Q12873 LINC00933-203ENST00000559812 219 ntBASIC1.41□□□□□ -2.18
CHD3Q12873 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC1.41□□□□□ -2.18
CHD3Q12873 AL157834.3-201ENST00000615543 103 ntBASIC1.41□□□□□ -2.18
CHD3Q12873 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.41□□□□□ -2.18
CHD3Q12873 MTND5P35-201ENST00000557537 1720 ntBASIC1.41□□□□□ -2.18
CHD3Q12873 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC1.4□□□□□ -2.18
CHD3Q12873 Z98749.2-208ENST00000381646 500 ntBASIC1.4□□□□□ -2.18
CHD3Q12873 RNU6-1-201ENST00000383898 107 ntBASIC1.4□□□□□ -2.18
CHD3Q12873 RNU6-42P-201ENST00000384165 107 ntBASIC1.4□□□□□ -2.18
CHD3Q12873 RNU6-36P-201ENST00000384172 107 ntBASIC1.4□□□□□ -2.18
CHD3Q12873 RNU6-4P-201ENST00000384205 107 ntBASIC1.4□□□□□ -2.18
CHD3Q12873 RNU6-5P-201ENST00000384238 107 ntBASIC1.4□□□□□ -2.18
CHD3Q12873 RNU6-3P-201ENST00000384314 107 ntBASIC1.4□□□□□ -2.18
CHD3Q12873 RNU6-2-201ENST00000384627 107 ntBASIC1.4□□□□□ -2.18
CHD3Q12873 RNU6-9-201ENST00000384776 107 ntBASIC1.4□□□□□ -2.18
CHD3Q12873 RNU6-33P-201ENST00000384793 107 ntBASIC1.4□□□□□ -2.18
CHD3Q12873 SNRPEP2-201ENST00000397592 279 ntBASIC1.4□□□□□ -2.18
CHD3Q12873 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC1.4□□□□□ -2.18
CHD3Q12873 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.4□□□□□ -2.18
CHD3Q12873 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC1.4□□□□□ -2.18
CHD3Q12873 AL589880.1-201ENST00000448271 287 ntBASIC1.4□□□□□ -2.18
CHD3Q12873 AC104164.3-201ENST00000467363 1258 ntBASIC1.4□□□□□ -2.18
CHD3Q12873 AC015908.1-201ENST00000478739 476 ntBASIC1.4□□□□□ -2.18
CHD3Q12873 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC1.4□□□□□ -2.18
CHD3Q12873 RNU5A-7P-201ENST00000515979 116 ntBASIC1.4□□□□□ -2.18
CHD3Q12873 SNORD19.2-201ENST00000516978 73 ntBASIC1.4□□□□□ -2.18
CHD3Q12873 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC1.4□□□□□ -2.18
CHD3Q12873 ZNF705CP-201ENST00000530515 889 ntBASIC1.4□□□□□ -2.18
CHD3Q12873 MIR5571-201ENST00000577998 113 ntBASIC1.4□□□□□ -2.18
CHD3Q12873 RNU6-6P-201ENST00000606623 107 ntBASIC1.4□□□□□ -2.18
CHD3Q12873 AP000238.1-201ENST00000608759 426 ntBASIC1.4□□□□□ -2.18
CHD3Q12873 AC004908.2-201ENST00000609090 574 ntBASIC1.4□□□□□ -2.18
CHD3Q12873 AL627230.6-201ENST00000611129 280 ntBASIC1.4□□□□□ -2.18
CHD3Q12873 STMN1P1-201ENST00000617809 440 ntBASIC1.4□□□□□ -2.18
CHD3Q12873 MIR6734-201ENST00000621166 68 ntBASIC1.4□□□□□ -2.18
CHD3Q12873 RNU6-461P-201ENST00000364195 107 ntBASIC1.4□□□□□ -2.19
CHD3Q12873 Y_RNA.354-201ENST00000365448 111 ntBASIC1.4□□□□□ -2.19
CHD3Q12873 RNU6-339P-201ENST00000384310 107 ntBASIC1.4□□□□□ -2.19
CHD3Q12873 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
CHD3Q12873 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC1.4□□□□□ -2.19
CHD3Q12873 AL358075.3-201ENST00000426289 226 ntBASIC1.4□□□□□ -2.19
CHD3Q12873 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC1.4□□□□□ -2.19
CHD3Q12873 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC1.4□□□□□ -2.19
CHD3Q12873 RAB11AP1-201ENST00000442978 646 ntBASIC1.4□□□□□ -2.19
CHD3Q12873 AC017099.1-201ENST00000448261 1028 ntBASIC1.4□□□□□ -2.19
CHD3Q12873 TOMM22P6-201ENST00000465035 409 ntBASIC1.4□□□□□ -2.19
CHD3Q12873 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC1.4□□□□□ -2.19
CHD3Q12873 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
CHD3Q12873 AC114786.4-201ENST00000508771 728 ntBASIC1.4□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 128.8 ms