Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 DERA-209ENST00000532964 854 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXA4Q00056 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXA4Q00056 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC3.48□□□□□ -1.85
HOXA4Q00056 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXA4Q00056 AC012119.1-201ENST00000603184 222 ntBASIC3.48□□□□□ -1.85
HOXA4Q00056 AL080274.1-201ENST00000605565 220 ntBASIC3.48□□□□□ -1.85
HOXA4Q00056 RNU6ATAC35P-201ENST00000609276 444 ntBASIC3.48□□□□□ -1.85
HOXA4Q00056 MIR6867-201ENST00000610636 67 ntBASIC3.48□□□□□ -1.85
HOXA4Q00056 SNX18P1Y-201ENST00000616231 511 ntBASIC3.48□□□□□ -1.85
HOXA4Q00056 AL355365.1-201ENST00000616480 294 ntBASIC3.48□□□□□ -1.85
HOXA4Q00056 MIR8059-201ENST00000620427 81 ntBASIC3.48□□□□□ -1.85
HOXA4Q00056 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC3.48□□□□□ -1.85
HOXA4Q00056 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXA4Q00056 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXA4Q00056 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC3.48□□□□□ -1.85
HOXA4Q00056 MTCO1P12-201ENST00000414273 1543 ntBASIC3.48□□□□□ -1.85
HOXA4Q00056 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
HOXA4Q00056 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
HOXA4Q00056 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXA4Q00056 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXA4Q00056 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXA4Q00056 LINC02471-203ENST00000641941 4752 ntBASIC3.48□□□□□ -1.85
HOXA4Q00056 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC3.48□□□□□ -1.85
HOXA4Q00056 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXA4Q00056 ZNF519P1-201ENST00000449011 1626 ntBASIC3.48□□□□□ -1.85
HOXA4Q00056 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC3.48□□□□□ -1.85
HOXA4Q00056 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXA4Q00056 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC3.47□□□□□ -1.85
HOXA4Q00056 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
HOXA4Q00056 RLIMP1-201ENST00000339626 1680 ntBASIC3.47□□□□□ -1.85
HOXA4Q00056 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.47□□□□□ -1.85
HOXA4Q00056 MIR513A2-201ENST00000385249 127 ntBASIC3.47□□□□□ -1.85
HOXA4Q00056 RNU6-817P-201ENST00000391083 104 ntBASIC3.47□□□□□ -1.85
HOXA4Q00056 AL590704.1-201ENST00000402856 794 ntBASIC3.47□□□□□ -1.85
HOXA4Q00056 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXA4Q00056 RPLP0P7-201ENST00000416050 667 ntBASIC3.47□□□□□ -1.85
HOXA4Q00056 AL139396.1-201ENST00000421137 167 ntBASIC3.47□□□□□ -1.85
HOXA4Q00056 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.47□□□□□ -1.85
HOXA4Q00056 AL358472.1-201ENST00000431295 329 ntBASIC3.47□□□□□ -1.85
HOXA4Q00056 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC3.47□□□□□ -1.85
HOXA4Q00056 MTND1P17-201ENST00000448961 204 ntBASIC3.47□□□□□ -1.85
HOXA4Q00056 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC3.47□□□□□ -1.85
HOXA4Q00056 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXA4Q00056 AC103987.1-201ENST00000473394 348 ntBASIC3.47□□□□□ -1.85
HOXA4Q00056 HMGB1P22-201ENST00000505315 124 ntBASIC3.47□□□□□ -1.85
HOXA4Q00056 AC008526.1-201ENST00000509149 338 ntBASIC3.47□□□□□ -1.85
HOXA4Q00056 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXA4Q00056 PPBPP1-201ENST00000510807 373 ntBASIC3.47□□□□□ -1.85
HOXA4Q00056 AC104136.1-201ENST00000512969 394 ntBASIC3.47□□□□□ -1.85
HOXA4Q00056 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
HOXA4Q00056 RNU6-327P-201ENST00000516270 127 ntBASIC3.47□□□□□ -1.85
HOXA4Q00056 RNU6-914P-201ENST00000516749 109 ntBASIC3.47□□□□□ -1.85
HOXA4Q00056 AC022882.1-201ENST00000532142 501 ntBASIC3.47□□□□□ -1.85
HOXA4Q00056 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXA4Q00056 ELOCP31-201ENST00000540463 467 ntBASIC3.47□□□□□ -1.85
HOXA4Q00056 AC063950.1-201ENST00000552036 308 ntBASIC3.47□□□□□ -1.85
HOXA4Q00056 AL355836.1-201ENST00000555951 870 ntBASIC3.47□□□□□ -1.85
HOXA4Q00056 MTND6P33-201ENST00000571794 183 ntBASIC3.47□□□□□ -1.85
HOXA4Q00056 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC3.47□□□□□ -1.85
HOXA4Q00056 MIR4697-201ENST00000582977 78 ntBASIC3.47□□□□□ -1.85
HOXA4Q00056 SNRPGP15-201ENST00000600149 222 ntBASIC3.47□□□□□ -1.85
HOXA4Q00056 BDH2P1-201ENST00000602288 736 ntBASIC3.47□□□□□ -1.85
HOXA4Q00056 SNRPGP17-201ENST00000603780 214 ntBASIC3.47□□□□□ -1.85
HOXA4Q00056 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
HOXA4Q00056 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.47□□□□□ -1.85
HOXA4Q00056 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
HOXA4Q00056 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC3.47□□□□□ -1.85
HOXA4Q00056 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.47□□□□□ -1.85
HOXA4Q00056 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC3.47□□□□□ -1.85
HOXA4Q00056 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
HOXA4Q00056 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
HOXA4Q00056 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.47□□□□□ -1.85
HOXA4Q00056 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
HOXA4Q00056 AC090337.1-201ENST00000579651 2074 ntBASIC3.47□□□□□ -1.85
HOXA4Q00056 MARK2P15-201ENST00000432204 2186 ntBASIC3.46□□□□□ -1.85
HOXA4Q00056 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC3.46□□□□□ -1.85
HOXA4Q00056 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.85
HOXA4Q00056 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC3.46□□□□□ -1.85
HOXA4Q00056 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.85
HOXA4Q00056 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC3.46□□□□□ -1.86
HOXA4Q00056 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC3.46□□□□□ -1.86
HOXA4Q00056 AL133243.3-201ENST00000617415 3004 ntBASIC3.46□□□□□ -1.86
HOXA4Q00056 RNU5A-1-201ENST00000362698 116 ntBASIC3.46□□□□□ -1.86
HOXA4Q00056 Y_RNA.135-201ENST00000363439 95 ntBASIC3.46□□□□□ -1.86
HOXA4Q00056 SNORA70.2-201ENST00000364506 135 ntBASIC3.46□□□□□ -1.86
HOXA4Q00056 RNU6-1303P-201ENST00000364841 107 ntBASIC3.46□□□□□ -1.86
HOXA4Q00056 SNORA4.3-201ENST00000365564 137 ntBASIC3.46□□□□□ -1.86
HOXA4Q00056 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.86
HOXA4Q00056 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXA4Q00056 RNU6-45P-201ENST00000384471 107 ntBASIC3.46□□□□□ -1.86
HOXA4Q00056 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
HOXA4Q00056 MIR1179-201ENST00000408703 91 ntBASIC3.46□□□□□ -1.86
HOXA4Q00056 RNU4-6P-201ENST00000410804 122 ntBASIC3.46□□□□□ -1.86
HOXA4Q00056 Z82205.1-201ENST00000428456 297 ntBASIC3.46□□□□□ -1.86
HOXA4Q00056 AC004975.1-201ENST00000428733 208 ntBASIC3.46□□□□□ -1.86
HOXA4Q00056 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.46□□□□□ -1.86
HOXA4Q00056 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC3.46□□□□□ -1.86
HOXA4Q00056 HMGB3P22-202ENST00000451823 572 ntBASIC3.46□□□□□ -1.86
HOXA4Q00056 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC3.46□□□□□ -1.86
HOXA4Q00056 RNU7-152P-201ENST00000458982 64 ntBASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 164.6 ms