Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
RNF4P78317 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.42□□□□□ -1.7
RNF4P78317 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
RNF4P78317 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
RNF4P78317 Y_RNA.33-201ENST00000362591 102 ntBASIC4.42□□□□□ -1.7
RNF4P78317 Y_RNA.307-201ENST00000365022 117 ntBASIC4.42□□□□□ -1.7
RNF4P78317 Y_RNA.396-201ENST00000383949 103 ntBASIC4.42□□□□□ -1.7
RNF4P78317 RNU6-933P-201ENST00000384424 107 ntBASIC4.42□□□□□ -1.7
RNF4P78317 MIR301A-201ENST00000385261 86 ntBASIC4.42□□□□□ -1.7
RNF4P78317 RNU6-1156P-201ENST00000410365 100 ntBASIC4.42□□□□□ -1.7
RNF4P78317 RNU6-1025P-201ENST00000410629 104 ntBASIC4.42□□□□□ -1.7
RNF4P78317 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC4.42□□□□□ -1.7
RNF4P78317 RPS15AP10-201ENST00000432472 382 ntBASIC4.42□□□□□ -1.7
RNF4P78317 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC4.42□□□□□ -1.7
RNF4P78317 AL365440.1-201ENST00000436135 2167 ntBASIC4.42□□□□□ -1.7
RNF4P78317 AC016831.4-201ENST00000438302 307 ntBASIC4.42□□□□□ -1.7
RNF4P78317 AL591473.1-201ENST00000464297 313 ntBASIC4.42□□□□□ -1.7
RNF4P78317 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.42□□□□□ -1.7
RNF4P78317 AC104564.1-201ENST00000493028 407 ntBASIC4.42□□□□□ -1.7
RNF4P78317 VWA8P1-201ENST00000510889 176 ntBASIC4.42□□□□□ -1.7
RNF4P78317 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC4.42□□□□□ -1.7
RNF4P78317 RNA5SP249-201ENST00000516127 99 ntBASIC4.42□□□□□ -1.7
RNF4P78317 Y_RNA.668-201ENST00000516233 93 ntBASIC4.42□□□□□ -1.7
RNF4P78317 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.42□□□□□ -1.7
RNF4P78317 UTP23-205ENST00000520733 369 ntTSL 3 BASIC4.42□□□□□ -1.7
RNF4P78317 AC022616.4-201ENST00000522985 181 ntBASIC4.42□□□□□ -1.7
RNF4P78317 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC4.42□□□□□ -1.7
RNF4P78317 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC4.42□□□□□ -1.7
RNF4P78317 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC4.42□□□□□ -1.7
RNF4P78317 HMGB1P14-201ENST00000557424 591 ntBASIC4.42□□□□□ -1.7
RNF4P78317 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC4.42□□□□□ -1.7
RNF4P78317 CYCSP40-201ENST00000575927 294 ntBASIC4.42□□□□□ -1.7
RNF4P78317 MIR1273C-201ENST00000578669 77 ntBASIC4.42□□□□□ -1.7
RNF4P78317 HMGB1P50-201ENST00000605814 607 ntBASIC4.42□□□□□ -1.7
RNF4P78317 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
RNF4P78317 AC107871.2-201ENST00000612894 502 ntBASIC4.42□□□□□ -1.7
RNF4P78317 RMST_4.1-201ENST00000616886 107 ntBASIC4.42□□□□□ -1.7
RNF4P78317 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
RNF4P78317 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.41□□□□□ -1.7
RNF4P78317 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.41□□□□□ -1.7
RNF4P78317 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
RNF4P78317 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.41□□□□□ -1.7
RNF4P78317 RNY1P16-201ENST00000363063 111 ntBASIC4.41□□□□□ -1.7
RNF4P78317 RNU4-42P-201ENST00000364738 142 ntBASIC4.41□□□□□ -1.7
RNF4P78317 SNORD14.1-201ENST00000365609 90 ntBASIC4.41□□□□□ -1.7
RNF4P78317 RNU6-395P-201ENST00000365662 106 ntBASIC4.41□□□□□ -1.7
RNF4P78317 Y_RNA.556-201ENST00000384677 113 ntBASIC4.41□□□□□ -1.7
RNF4P78317 Y_RNA.577-201ENST00000384794 101 ntBASIC4.41□□□□□ -1.7
RNF4P78317 RNU1-82P-201ENST00000390851 165 ntBASIC4.41□□□□□ -1.7
RNF4P78317 MIR298-201ENST00000401212 88 ntBASIC4.41□□□□□ -1.7
RNF4P78317 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4.41□□□□□ -1.7
RNF4P78317 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
RNF4P78317 AC108032.1-201ENST00000416706 207 ntBASIC4.41□□□□□ -1.7
RNF4P78317 TOMM22P1-201ENST00000418578 312 ntBASIC4.41□□□□□ -1.7
RNF4P78317 AC244098.2-201ENST00000422068 99 ntBASIC4.41□□□□□ -1.7
RNF4P78317 USP9YP7-201ENST00000436723 430 ntBASIC4.41□□□□□ -1.7
RNF4P78317 RPS24P13-201ENST00000442520 397 ntBASIC4.41□□□□□ -1.7
RNF4P78317 USP9YP32-201ENST00000452432 430 ntBASIC4.41□□□□□ -1.7
RNF4P78317 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC4.41□□□□□ -1.7
RNF4P78317 AC010285.1-201ENST00000470580 392 ntBASIC4.41□□□□□ -1.7
RNF4P78317 RPL22P13-201ENST00000493291 347 ntBASIC4.41□□□□□ -1.7
RNF4P78317 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC4.41□□□□□ -1.7
RNF4P78317 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC4.41□□□□□ -1.7
RNF4P78317 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
RNF4P78317 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC4.41□□□□□ -1.7
RNF4P78317 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.41□□□□□ -1.7
RNF4P78317 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC4.41□□□□□ -1.7
RNF4P78317 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC4.41□□□□□ -1.7
RNF4P78317 MIR5188-201ENST00000583467 113 ntBASIC4.41□□□□□ -1.7
RNF4P78317 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC4.41□□□□□ -1.7
RNF4P78317 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
RNF4P78317 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.41□□□□□ -1.7
RNF4P78317 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
RNF4P78317 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
RNF4P78317 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
RNF4P78317 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
RNF4P78317 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.7
RNF4P78317 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
RNF4P78317 AC008669.1-201ENST00000565823 2178 ntBASIC4.4□□□□□ -1.7
RNF4P78317 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.7
RNF4P78317 SDAD1P2-201ENST00000441308 2028 ntBASIC4.4□□□□□ -1.7
RNF4P78317 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
RNF4P78317 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
RNF4P78317 RNU6-37P-201ENST00000362692 107 ntBASIC4.4□□□□□ -1.71
RNF4P78317 RNU6-379P-201ENST00000363813 104 ntBASIC4.4□□□□□ -1.71
RNF4P78317 RNU6-11P-201ENST00000364234 107 ntBASIC4.4□□□□□ -1.71
RNF4P78317 RNVU1-6-201ENST00000364688 164 ntBASIC4.4□□□□□ -1.71
RNF4P78317 RNU6-7-201ENST00000364784 107 ntBASIC4.4□□□□□ -1.71
RNF4P78317 RNU6-596P-201ENST00000365395 98 ntBASIC4.4□□□□□ -1.71
RNF4P78317 RNU6-8-201ENST00000365467 107 ntBASIC4.4□□□□□ -1.71
RNF4P78317 Y_RNA.380-201ENST00000365663 111 ntBASIC4.4□□□□□ -1.71
RNF4P78317 RNU6-25P-201ENST00000383873 107 ntBASIC4.4□□□□□ -1.71
RNF4P78317 RNU6-1-201ENST00000383898 107 ntBASIC4.4□□□□□ -1.71
RNF4P78317 RNU6-48P-201ENST00000384161 107 ntBASIC4.4□□□□□ -1.71
RNF4P78317 RNU6-36P-201ENST00000384172 107 ntBASIC4.4□□□□□ -1.71
RNF4P78317 RNU6-4P-201ENST00000384205 107 ntBASIC4.4□□□□□ -1.71
RNF4P78317 RNU6-5P-201ENST00000384238 107 ntBASIC4.4□□□□□ -1.71
RNF4P78317 RNU6-3P-201ENST00000384314 107 ntBASIC4.4□□□□□ -1.71
RNF4P78317 RNU6-16P-201ENST00000384385 107 ntBASIC4.4□□□□□ -1.71
RNF4P78317 RNU6-15P-201ENST00000384534 107 ntBASIC4.4□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 121.7 ms