Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC4.8□□□□□ -1.64
LIG3P49916 OR4G2P-202ENST00000641004 1759 ntBASIC4.8□□□□□ -1.64
LIG3P49916 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LIG3P49916 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
LIG3P49916 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LIG3P49916 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
LIG3P49916 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
LIG3P49916 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
LIG3P49916 AC015813.6-201ENST00000624409 5808 ntBASIC4.79□□□□□ -1.64
LIG3P49916 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
LIG3P49916 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
LIG3P49916 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC4.79□□□□□ -1.64
LIG3P49916 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.79□□□□□ -1.64
LIG3P49916 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
LIG3P49916 DEFB108F-201ENST00000344638 222 ntBASIC4.79□□□□□ -1.64
LIG3P49916 RNU6-335P-201ENST00000364563 113 ntBASIC4.79□□□□□ -1.64
LIG3P49916 Y_RNA.401-201ENST00000383965 117 ntBASIC4.79□□□□□ -1.64
LIG3P49916 RNU6-331P-201ENST00000384724 107 ntBASIC4.79□□□□□ -1.64
LIG3P49916 MIR517A-201ENST00000385001 87 ntBASIC4.79□□□□□ -1.64
LIG3P49916 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
LIG3P49916 Z74021.1-201ENST00000423610 407 ntBASIC4.79□□□□□ -1.64
LIG3P49916 AL645608.4-201ENST00000423619 154 ntBASIC4.79□□□□□ -1.64
LIG3P49916 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC4.79□□□□□ -1.64
LIG3P49916 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC4.79□□□□□ -1.64
LIG3P49916 SUMO2P6-201ENST00000505273 288 ntBASIC4.79□□□□□ -1.64
LIG3P49916 RNA5SP384-201ENST00000516615 116 ntBASIC4.79□□□□□ -1.64
LIG3P49916 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.79□□□□□ -1.64
LIG3P49916 IGKV1-32-201ENST00000519290 311 ntBASIC4.79□□□□□ -1.64
LIG3P49916 AC104576.1-201ENST00000524225 88 ntBASIC4.79□□□□□ -1.64
LIG3P49916 COX6CP5-201ENST00000527162 228 ntBASIC4.79□□□□□ -1.64
LIG3P49916 AC008269.2-201ENST00000561915 1105 ntBASIC4.79□□□□□ -1.64
LIG3P49916 MIR5699-201ENST00000578903 90 ntBASIC4.79□□□□□ -1.64
LIG3P49916 AC209154.1-201ENST00000582156 337 ntBASIC4.79□□□□□ -1.64
LIG3P49916 OR1M4P-201ENST00000589199 287 ntBASIC4.79□□□□□ -1.64
LIG3P49916 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.79□□□□□ -1.64
LIG3P49916 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
LIG3P49916 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC4.79□□□□□ -1.64
LIG3P49916 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.79□□□□□ -1.64
LIG3P49916 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
LIG3P49916 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
LIG3P49916 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
LIG3P49916 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
LIG3P49916 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
LIG3P49916 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.78□□□□□ -1.64
LIG3P49916 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
LIG3P49916 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
LIG3P49916 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
LIG3P49916 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
LIG3P49916 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.78□□□□□ -1.64
LIG3P49916 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
LIG3P49916 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
LIG3P49916 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
LIG3P49916 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
LIG3P49916 RN7SKP115-201ENST00000363177 317 ntBASIC4.78□□□□□ -1.64
LIG3P49916 Y_RNA.149-201ENST00000363558 117 ntBASIC4.78□□□□□ -1.64
LIG3P49916 RNU6-1059P-201ENST00000363752 98 ntBASIC4.78□□□□□ -1.64
LIG3P49916 Y_RNA.496-201ENST00000384444 101 ntBASIC4.78□□□□□ -1.64
LIG3P49916 Y_RNA.527-201ENST00000384573 102 ntBASIC4.78□□□□□ -1.64
LIG3P49916 RNU6-1179P-201ENST00000384667 107 ntBASIC4.78□□□□□ -1.64
LIG3P49916 MIR921-201ENST00000401133 56 ntBASIC4.78□□□□□ -1.64
LIG3P49916 MIR298-201ENST00000401212 88 ntBASIC4.78□□□□□ -1.64
LIG3P49916 AL590139.1-201ENST00000416267 400 ntBASIC4.78□□□□□ -1.64
LIG3P49916 AL353621.1-201ENST00000418219 243 ntBASIC4.78□□□□□ -1.64
LIG3P49916 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC4.78□□□□□ -1.64
LIG3P49916 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC4.78□□□□□ -1.64
LIG3P49916 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC4.78□□□□□ -1.64
LIG3P49916 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC4.78□□□□□ -1.64
LIG3P49916 AC073264.2-201ENST00000448886 166 ntBASIC4.78□□□□□ -1.64
LIG3P49916 HMGB3P30-201ENST00000457863 606 ntBASIC4.78□□□□□ -1.64
LIG3P49916 SNORD108-201ENST00000459332 71 ntBASIC4.78□□□□□ -1.64
LIG3P49916 AC008897.1-201ENST00000494006 347 ntBASIC4.78□□□□□ -1.64
LIG3P49916 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.78□□□□□ -1.64
LIG3P49916 AC025445.1-201ENST00000502728 300 ntBASIC4.78□□□□□ -1.64
LIG3P49916 AC091868.1-201ENST00000508746 304 ntBASIC4.78□□□□□ -1.64
LIG3P49916 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC4.78□□□□□ -1.64
LIG3P49916 RNU1-6P-201ENST00000516290 144 ntBASIC4.78□□□□□ -1.64
LIG3P49916 RNA5SP471-201ENST00000516971 106 ntBASIC4.78□□□□□ -1.64
LIG3P49916 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
LIG3P49916 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.78□□□□□ -1.64
LIG3P49916 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC4.78□□□□□ -1.64
LIG3P49916 AC004817.2-201ENST00000561794 651 ntBASIC4.78□□□□□ -1.64
LIG3P49916 AC093249.4-201ENST00000564755 259 ntBASIC4.78□□□□□ -1.64
LIG3P49916 AC084783.1-201ENST00000565846 910 ntBASIC4.78□□□□□ -1.64
LIG3P49916 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.78□□□□□ -1.64
LIG3P49916 MIR4503-201ENST00000582187 83 ntBASIC4.78□□□□□ -1.64
LIG3P49916 MIR3149-201ENST00000584629 83 ntBASIC4.78□□□□□ -1.64
LIG3P49916 MIR6780A-201ENST00000615089 68 ntBASIC4.78□□□□□ -1.64
LIG3P49916 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
LIG3P49916 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
LIG3P49916 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.78□□□□□ -1.64
LIG3P49916 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
LIG3P49916 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
LIG3P49916 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.78□□□□□ -1.64
LIG3P49916 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.78□□□□□ -1.64
LIG3P49916 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.78□□□□□ -1.65
LIG3P49916 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
LIG3P49916 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
LIG3P49916 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
LIG3P49916 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
LIG3P49916 AL590240.1-201ENST00000334118 313 ntBASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms