Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 SNORA18.6-201ENST00000516792 115 ntBASIC2.81□□□□□ -1.96
CDX1P47902 RNU6-677P-201ENST00000516914 101 ntBASIC2.81□□□□□ -1.96
CDX1P47902 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC2.81□□□□□ -1.96
CDX1P47902 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC2.81□□□□□ -1.96
CDX1P47902 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC2.81□□□□□ -1.96
CDX1P47902 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC2.81□□□□□ -1.96
CDX1P47902 AL356057.1-201ENST00000533798 831 ntBASIC2.81□□□□□ -1.96
CDX1P47902 MGST1-215ENST00000540056 546 ntTSL 3 BASIC2.81□□□□□ -1.96
CDX1P47902 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC2.81□□□□□ -1.96
CDX1P47902 NRBF2P1-201ENST00000587407 859 ntBASIC2.81□□□□□ -1.96
CDX1P47902 AC119751.7-201ENST00000600494 245 ntBASIC2.81□□□□□ -1.96
CDX1P47902 AC090578.1-201ENST00000604955 591 ntBASIC2.81□□□□□ -1.96
CDX1P47902 AL136363.1-201ENST00000605349 337 ntBASIC2.81□□□□□ -1.96
CDX1P47902 AC087752.4-201ENST00000605911 462 ntBASIC2.81□□□□□ -1.96
CDX1P47902 AL365204.3-201ENST00000612448 685 ntBASIC2.81□□□□□ -1.96
CDX1P47902 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
CDX1P47902 TEX41-300ENST00000631048 69 ntTSL 5 BASIC2.81□□□□□ -1.96
CDX1P47902 MTND5P19-201ENST00000424872 1794 ntBASIC2.81□□□□□ -1.96
CDX1P47902 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC2.81□□□□□ -1.96
CDX1P47902 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.81□□□□□ -1.96
CDX1P47902 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC2.81□□□□□ -1.96
CDX1P47902 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
CDX1P47902 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC2.8□□□□□ -1.96
CDX1P47902 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC2.8□□□□□ -1.96
CDX1P47902 AL356274.2-201ENST00000624379 3752 ntBASIC2.8□□□□□ -1.96
CDX1P47902 FRG1CP-201ENST00000358464 769 ntBASIC2.8□□□□□ -1.96
CDX1P47902 SNORD9-201ENST00000362566 104 ntBASIC2.8□□□□□ -1.96
CDX1P47902 Y_RNA.77-201ENST00000362962 107 ntBASIC2.8□□□□□ -1.96
CDX1P47902 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
CDX1P47902 SNORD116-9-201ENST00000384000 95 ntBASIC2.8□□□□□ -1.96
CDX1P47902 SNORD116-3-201ENST00000384287 95 ntBASIC2.8□□□□□ -1.96
CDX1P47902 RNU6-39P-201ENST00000384344 107 ntBASIC2.8□□□□□ -1.96
CDX1P47902 SNORD116-7-201ENST00000384404 95 ntBASIC2.8□□□□□ -1.96
CDX1P47902 SNORD116-5-201ENST00000384462 95 ntBASIC2.8□□□□□ -1.96
CDX1P47902 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC2.8□□□□□ -1.96
CDX1P47902 RPL7P46-201ENST00000425129 740 ntBASIC2.8□□□□□ -1.96
CDX1P47902 YME1L1P1-201ENST00000429435 297 ntBASIC2.8□□□□□ -1.96
CDX1P47902 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC2.8□□□□□ -1.96
CDX1P47902 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC2.8□□□□□ -1.96
CDX1P47902 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC2.8□□□□□ -1.96
CDX1P47902 RPS24P1-201ENST00000438550 371 ntBASIC2.8□□□□□ -1.96
CDX1P47902 RPL21P23-201ENST00000446654 460 ntBASIC2.8□□□□□ -1.96
CDX1P47902 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC2.8□□□□□ -1.96
CDX1P47902 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC2.8□□□□□ -1.96
CDX1P47902 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC2.8□□□□□ -1.96
CDX1P47902 AC007182.2-201ENST00000489251 402 ntBASIC2.8□□□□□ -1.96
CDX1P47902 RPS29P20-201ENST00000489592 171 ntBASIC2.8□□□□□ -1.96
CDX1P47902 AC026427.2-201ENST00000506228 536 ntBASIC2.8□□□□□ -1.96
CDX1P47902 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC2.8□□□□□ -1.96
CDX1P47902 AC114786.4-201ENST00000508771 728 ntBASIC2.8□□□□□ -1.96
CDX1P47902 RNU6-579P-201ENST00000516879 102 ntBASIC2.8□□□□□ -1.96
CDX1P47902 MIR2276-201ENST00000516886 89 ntBASIC2.8□□□□□ -1.96
CDX1P47902 AC022616.3-201ENST00000523940 148 ntBASIC2.8□□□□□ -1.96
CDX1P47902 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC2.8□□□□□ -1.96
CDX1P47902 AC103843.2-201ENST00000530523 682 ntBASIC2.8□□□□□ -1.96
CDX1P47902 OR5B10P-201ENST00000532869 642 ntBASIC2.8□□□□□ -1.96
CDX1P47902 AP000873.5-201ENST00000533906 236 ntBASIC2.8□□□□□ -1.96
CDX1P47902 AC087883.1-201ENST00000551882 391 ntBASIC2.8□□□□□ -1.96
CDX1P47902 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC2.8□□□□□ -1.96
CDX1P47902 MIR3167-201ENST00000579623 85 ntBASIC2.8□□□□□ -1.96
CDX1P47902 HMGN2P15-201ENST00000585707 270 ntBASIC2.8□□□□□ -1.96
CDX1P47902 AC008498.1-201ENST00000613012 531 ntBASIC2.8□□□□□ -1.96
CDX1P47902 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.8□□□□□ -1.96
CDX1P47902 AP003355.3-201ENST00000623465 114 ntBASIC2.8□□□□□ -1.96
CDX1P47902 AC026422.1-201ENST00000623961 452 ntBASIC2.8□□□□□ -1.96
CDX1P47902 AC068880.5-201ENST00000624331 290 ntBASIC2.8□□□□□ -1.96
CDX1P47902 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC2.8□□□□□ -1.96
CDX1P47902 AC084035.1-201ENST00000634543 607 ntBASIC2.8□□□□□ -1.96
CDX1P47902 AC110079.1-202ENST00000635213 138 ntBASIC2.8□□□□□ -1.96
CDX1P47902 AP003399.1-201ENST00000637534 361 ntBASIC2.8□□□□□ -1.96
CDX1P47902 MTND5P42-201ENST00000637720 498 ntBASIC2.8□□□□□ -1.96
CDX1P47902 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC2.8□□□□□ -1.96
CDX1P47902 AC119674.1-207ENST00000641355 633 ntBASIC2.8□□□□□ -1.96
CDX1P47902 AL732372.2-225ENST00000642124 456 ntBASIC2.8□□□□□ -1.96
CDX1P47902 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
CDX1P47902 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC2.8□□□□□ -1.96
CDX1P47902 AL359693.1-201ENST00000614959 2407 ntBASIC2.8□□□□□ -1.96
CDX1P47902 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC2.8□□□□□ -1.96
CDX1P47902 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
CDX1P47902 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC2.79□□□□□ -1.96
CDX1P47902 RNA5SP42-201ENST00000364278 115 ntBASIC2.79□□□□□ -1.96
CDX1P47902 MIR767-201ENST00000390228 109 ntBASIC2.79□□□□□ -1.96
CDX1P47902 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
CDX1P47902 OFD1P1Y-201ENST00000411756 1225 ntBASIC2.79□□□□□ -1.96
CDX1P47902 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC2.79□□□□□ -1.96
CDX1P47902 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC2.79□□□□□ -1.96
CDX1P47902 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC2.79□□□□□ -1.96
CDX1P47902 ISCA1P1-201ENST00000426679 387 ntBASIC2.79□□□□□ -1.96
CDX1P47902 AL592045.1-201ENST00000429867 352 ntBASIC2.79□□□□□ -1.96
CDX1P47902 AL591212.2-201ENST00000433923 257 ntBASIC2.79□□□□□ -1.96
CDX1P47902 AC009961.2-201ENST00000435771 251 ntBASIC2.79□□□□□ -1.96
CDX1P47902 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC2.79□□□□□ -1.96
CDX1P47902 AC244505.5-201ENST00000443639 207 ntBASIC2.79□□□□□ -1.96
CDX1P47902 USP9YP29-201ENST00000445112 563 ntBASIC2.79□□□□□ -1.96
CDX1P47902 MTATP6P26-201ENST00000445926 662 ntBASIC2.79□□□□□ -1.96
CDX1P47902 AC093392.2-201ENST00000450682 337 ntBASIC2.79□□□□□ -1.96
CDX1P47902 FABP5P15-201ENST00000453566 214 ntBASIC2.79□□□□□ -1.96
CDX1P47902 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC2.79□□□□□ -1.96
CDX1P47902 RPS15AP34-201ENST00000487776 387 ntBASIC2.79□□□□□ -1.96
CDX1P47902 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC2.79□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms