Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 SNRPGP6-201ENST00000451124 220 ntBASIC3.52□□□□□ -1.85
PTPN9P43378 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC3.52□□□□□ -1.85
PTPN9P43378 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.52□□□□□ -1.85
PTPN9P43378 RPS4XP13-201ENST00000483219 789 ntBASIC3.52□□□□□ -1.85
PTPN9P43378 RPL21P13-201ENST00000488305 481 ntBASIC3.52□□□□□ -1.85
PTPN9P43378 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
PTPN9P43378 AL359273.1-201ENST00000510918 627 ntBASIC3.52□□□□□ -1.85
PTPN9P43378 AC105914.1-201ENST00000511798 226 ntBASIC3.52□□□□□ -1.85
PTPN9P43378 GMPSP1-201ENST00000514075 579 ntBASIC3.52□□□□□ -1.85
PTPN9P43378 SNORD27.1-201ENST00000516319 72 ntBASIC3.52□□□□□ -1.85
PTPN9P43378 RNU6-314P-201ENST00000516574 104 ntBASIC3.52□□□□□ -1.85
PTPN9P43378 RNU6-840P-201ENST00000517275 65 ntBASIC3.52□□□□□ -1.85
PTPN9P43378 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC3.52□□□□□ -1.85
PTPN9P43378 IGHV3-76-201ENST00000522465 295 ntBASIC3.52□□□□□ -1.85
PTPN9P43378 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.52□□□□□ -1.85
PTPN9P43378 AC007458.1-201ENST00000542812 373 ntBASIC3.52□□□□□ -1.85
PTPN9P43378 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC3.52□□□□□ -1.85
PTPN9P43378 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.52□□□□□ -1.85
PTPN9P43378 MTATP6P3-201ENST00000581686 676 ntBASIC3.52□□□□□ -1.85
PTPN9P43378 AC098848.2-201ENST00000588023 330 ntBASIC3.52□□□□□ -1.85
PTPN9P43378 AP001330.4-201ENST00000604350 154 ntBASIC3.52□□□□□ -1.85
PTPN9P43378 AP001330.5-201ENST00000607176 411 ntBASIC3.52□□□□□ -1.85
PTPN9P43378 AP002826.1-201ENST00000608835 315 ntBASIC3.52□□□□□ -1.85
PTPN9P43378 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.52□□□□□ -1.85
PTPN9P43378 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
PTPN9P43378 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.52□□□□□ -1.85
PTPN9P43378 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.52□□□□□ -1.85
PTPN9P43378 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
PTPN9P43378 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
PTPN9P43378 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
PTPN9P43378 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
PTPN9P43378 RNU5A-1-201ENST00000362698 116 ntBASIC3.51□□□□□ -1.85
PTPN9P43378 AP002088.1-201ENST00000382740 395 ntBASIC3.51□□□□□ -1.85
PTPN9P43378 RNU6-74P-201ENST00000384235 107 ntBASIC3.51□□□□□ -1.85
PTPN9P43378 RNU6-39P-201ENST00000384344 107 ntBASIC3.51□□□□□ -1.85
PTPN9P43378 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
PTPN9P43378 RPS4XP8-201ENST00000402039 771 ntBASIC3.51□□□□□ -1.85
PTPN9P43378 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.51□□□□□ -1.85
PTPN9P43378 AC069157.1-201ENST00000421749 137 ntBASIC3.51□□□□□ -1.85
PTPN9P43378 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.51□□□□□ -1.85
PTPN9P43378 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC3.51□□□□□ -1.85
PTPN9P43378 AC018630.2-202ENST00000422992 927 ntBASIC3.51□□□□□ -1.85
PTPN9P43378 AC020550.1-201ENST00000447385 163 ntBASIC3.51□□□□□ -1.85
PTPN9P43378 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC3.51□□□□□ -1.85
PTPN9P43378 AC003071.1-201ENST00000451219 789 ntBASIC3.51□□□□□ -1.85
PTPN9P43378 MTND2P24-201ENST00000453434 806 ntBASIC3.51□□□□□ -1.85
PTPN9P43378 AC010401.1-201ENST00000463867 348 ntBASIC3.51□□□□□ -1.85
PTPN9P43378 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.51□□□□□ -1.85
PTPN9P43378 RPS3AP14-201ENST00000483907 780 ntBASIC3.51□□□□□ -1.85
PTPN9P43378 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC3.51□□□□□ -1.85
PTPN9P43378 HSPD1P15-201ENST00000505573 1122 ntBASIC3.51□□□□□ -1.85
PTPN9P43378 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC3.51□□□□□ -1.85
PTPN9P43378 OR5BN1P-201ENST00000532955 829 ntBASIC3.51□□□□□ -1.85
PTPN9P43378 AC011602.1-201ENST00000546484 331 ntBASIC3.51□□□□□ -1.85
PTPN9P43378 AL355836.1-201ENST00000555951 870 ntBASIC3.51□□□□□ -1.85
PTPN9P43378 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.51□□□□□ -1.85
PTPN9P43378 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC3.51□□□□□ -1.85
PTPN9P43378 AC008739.3-201ENST00000603262 127 ntBASIC3.51□□□□□ -1.85
PTPN9P43378 AC012507.3-201ENST00000603556 477 ntBASIC3.51□□□□□ -1.85
PTPN9P43378 AC007363.1-201ENST00000604736 620 ntBASIC3.51□□□□□ -1.85
PTPN9P43378 AF250324.2-201ENST00000608299 610 ntBASIC3.51□□□□□ -1.85
PTPN9P43378 AC092954.2-201ENST00000609103 430 ntBASIC3.51□□□□□ -1.85
PTPN9P43378 AC090517.2-201ENST00000614966 680 ntBASIC3.51□□□□□ -1.85
PTPN9P43378 AL355365.1-201ENST00000616480 294 ntBASIC3.51□□□□□ -1.85
PTPN9P43378 AL157786.1-207ENST00000627771 695 ntBASIC3.51□□□□□ -1.85
PTPN9P43378 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
PTPN9P43378 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.51□□□□□ -1.85
PTPN9P43378 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
PTPN9P43378 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.5□□□□□ -1.85
PTPN9P43378 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC3.5□□□□□ -1.85
PTPN9P43378 RNU6-606P-201ENST00000384721 111 ntBASIC3.5□□□□□ -1.85
PTPN9P43378 CALM2P3-201ENST00000400429 449 ntBASIC3.5□□□□□ -1.85
PTPN9P43378 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.5□□□□□ -1.85
PTPN9P43378 SNORA11-201ENST00000408789 128 ntBASIC3.5□□□□□ -1.85
PTPN9P43378 RNA5SP129-201ENST00000410276 118 ntBASIC3.5□□□□□ -1.85
PTPN9P43378 RPS15AP6-201ENST00000420703 385 ntBASIC3.5□□□□□ -1.85
PTPN9P43378 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
PTPN9P43378 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.5□□□□□ -1.85
PTPN9P43378 AL356867.1-201ENST00000429623 299 ntBASIC3.5□□□□□ -1.85
PTPN9P43378 UBE2V1P8-201ENST00000437166 265 ntBASIC3.5□□□□□ -1.85
PTPN9P43378 SETP5-201ENST00000437270 562 ntBASIC3.5□□□□□ -1.85
PTPN9P43378 DDX3P2-201ENST00000446138 111 ntBASIC3.5□□□□□ -1.85
PTPN9P43378 AC013267.1-201ENST00000458227 267 ntBASIC3.5□□□□□ -1.85
PTPN9P43378 RPS20P20-201ENST00000460498 340 ntBASIC3.5□□□□□ -1.85
PTPN9P43378 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC3.5□□□□□ -1.85
PTPN9P43378 AC126389.1-201ENST00000477436 290 ntBASIC3.5□□□□□ -1.85
PTPN9P43378 ARL4AP2-201ENST00000507378 601 ntBASIC3.5□□□□□ -1.85
PTPN9P43378 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.5□□□□□ -1.85
PTPN9P43378 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.5□□□□□ -1.85
PTPN9P43378 AC011352.1-201ENST00000512300 793 ntBASIC3.5□□□□□ -1.85
PTPN9P43378 SCARNA15.2-201ENST00000516409 127 ntBASIC3.5□□□□□ -1.85
PTPN9P43378 RN7SKP258-201ENST00000517151 304 ntBASIC3.5□□□□□ -1.85
PTPN9P43378 MTND4LP26-201ENST00000518144 282 ntBASIC3.5□□□□□ -1.85
PTPN9P43378 HMGB1P41-201ENST00000520234 440 ntBASIC3.5□□□□□ -1.85
PTPN9P43378 NCAPGP2-201ENST00000557911 754 ntBASIC3.5□□□□□ -1.85
PTPN9P43378 HMGB1P33-201ENST00000563485 527 ntBASIC3.5□□□□□ -1.85
PTPN9P43378 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.5□□□□□ -1.85
PTPN9P43378 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC3.5□□□□□ -1.85
PTPN9P43378 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC3.5□□□□□ -1.85
PTPN9P43378 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms