Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.13□□□□□ -1.91
HNF4AP41235 UBBP3-201ENST00000445497 241 ntBASIC3.13□□□□□ -1.91
HNF4AP41235 SSXP1-201ENST00000453640 473 ntBASIC3.13□□□□□ -1.91
HNF4AP41235 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC3.13□□□□□ -1.91
HNF4AP41235 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.13□□□□□ -1.91
HNF4AP41235 AC106872.3-201ENST00000495104 446 ntBASIC3.13□□□□□ -1.91
HNF4AP41235 AC135721.1-201ENST00000497954 479 ntBASIC3.13□□□□□ -1.91
HNF4AP41235 HSPD1P15-201ENST00000505573 1122 ntBASIC3.13□□□□□ -1.91
HNF4AP41235 AC022447.3-201ENST00000506865 495 ntBASIC3.13□□□□□ -1.91
HNF4AP41235 SLC25A15P5-201ENST00000508033 253 ntBASIC3.13□□□□□ -1.91
HNF4AP41235 CDC42P4-201ENST00000510507 563 ntBASIC3.13□□□□□ -1.91
HNF4AP41235 AC074250.1-201ENST00000511117 192 ntBASIC3.13□□□□□ -1.91
HNF4AP41235 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
HNF4AP41235 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.13□□□□□ -1.91
HNF4AP41235 MAL2-203ENST00000534619 578 ntTSL 4 BASIC3.13□□□□□ -1.91
HNF4AP41235 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC3.13□□□□□ -1.91
HNF4AP41235 AC005771.1-201ENST00000585581 349 ntBASIC3.13□□□□□ -1.91
HNF4AP41235 AC006504.3-201ENST00000586818 523 ntBASIC3.13□□□□□ -1.91
HNF4AP41235 AC087683.1-201ENST00000591187 441 ntBASIC3.13□□□□□ -1.91
HNF4AP41235 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
HNF4AP41235 AC005332.10-201ENST00000612725 619 ntBASIC3.13□□□□□ -1.91
HNF4AP41235 AC093838.1-201ENST00000613014 469 ntBASIC3.13□□□□□ -1.91
HNF4AP41235 AC026585.1-201ENST00000619582 524 ntBASIC3.13□□□□□ -1.91
HNF4AP41235 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
HNF4AP41235 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
HNF4AP41235 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.13□□□□□ -1.91
HNF4AP41235 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.12□□□□□ -1.91
HNF4AP41235 RNU6-297P-201ENST00000384636 107 ntBASIC3.12□□□□□ -1.91
HNF4AP41235 RNU2-16P-201ENST00000410712 136 ntBASIC3.12□□□□□ -1.91
HNF4AP41235 AC007899.1-201ENST00000412776 775 ntBASIC3.12□□□□□ -1.91
HNF4AP41235 NDUFB4P5-201ENST00000415445 361 ntBASIC3.12□□□□□ -1.91
HNF4AP41235 AL451054.2-201ENST00000420896 202 ntBASIC3.12□□□□□ -1.91
HNF4AP41235 RPL7P37-201ENST00000425095 738 ntBASIC3.12□□□□□ -1.91
HNF4AP41235 AC005300.1-201ENST00000428401 373 ntBASIC3.12□□□□□ -1.91
HNF4AP41235 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC3.12□□□□□ -1.91
HNF4AP41235 USP9YP28-201ENST00000435142 589 ntBASIC3.12□□□□□ -1.91
HNF4AP41235 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC3.12□□□□□ -1.91
HNF4AP41235 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.12□□□□□ -1.91
HNF4AP41235 AL022238.1-201ENST00000442557 355 ntBASIC3.12□□□□□ -1.91
HNF4AP41235 AP000542.1-201ENST00000448473 371 ntBASIC3.12□□□□□ -1.91
HNF4AP41235 MTCO1P42-201ENST00000457379 726 ntBASIC3.12□□□□□ -1.91
HNF4AP41235 KC877373.1-201ENST00000479066 408 ntBASIC3.12□□□□□ -1.91
HNF4AP41235 AC110794.1-201ENST00000505816 425 ntBASIC3.12□□□□□ -1.91
HNF4AP41235 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC3.12□□□□□ -1.91
HNF4AP41235 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC3.12□□□□□ -1.91
HNF4AP41235 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC3.12□□□□□ -1.91
HNF4AP41235 SCARNA20.6-201ENST00000517251 106 ntBASIC3.12□□□□□ -1.91
HNF4AP41235 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC3.12□□□□□ -1.91
HNF4AP41235 MTCYBP20-201ENST00000524239 1129 ntBASIC3.12□□□□□ -1.91
HNF4AP41235 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC3.12□□□□□ -1.91
HNF4AP41235 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.12□□□□□ -1.91
HNF4AP41235 MIR4528-201ENST00000577763 90 ntBASIC3.12□□□□□ -1.91
HNF4AP41235 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC3.12□□□□□ -1.91
HNF4AP41235 AF038458.1-201ENST00000588406 262 ntBASIC3.12□□□□□ -1.91
HNF4AP41235 AC080078.2-201ENST00000603766 501 ntBASIC3.12□□□□□ -1.91
HNF4AP41235 AL591516.1-201ENST00000611326 274 ntBASIC3.12□□□□□ -1.91
HNF4AP41235 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC3.12□□□□□ -1.91
HNF4AP41235 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC3.12□□□□□ -1.91
HNF4AP41235 UCA1.1-201ENST00000620952 75 ntBASIC3.12□□□□□ -1.91
HNF4AP41235 AC091903.1-201ENST00000624322 454 ntBASIC3.12□□□□□ -1.91
HNF4AP41235 MTND1P37-201ENST00000636562 264 ntBASIC3.12□□□□□ -1.91
HNF4AP41235 PSMD5-AS1-215ENST00000640622 205 ntBASIC3.12□□□□□ -1.91
HNF4AP41235 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
HNF4AP41235 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
HNF4AP41235 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.11□□□□□ -1.91
HNF4AP41235 AC026241.1-201ENST00000517873 2142 ntBASIC3.11□□□□□ -1.91
HNF4AP41235 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
HNF4AP41235 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.11□□□□□ -1.91
HNF4AP41235 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC3.11□□□□□ -1.91
HNF4AP41235 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
HNF4AP41235 SNORA63.1-201ENST00000362493 131 ntBASIC3.11□□□□□ -1.91
HNF4AP41235 Y_RNA.41-201ENST00000362646 102 ntBASIC3.11□□□□□ -1.91
HNF4AP41235 RNA5SP72-201ENST00000364442 117 ntBASIC3.11□□□□□ -1.91
HNF4AP41235 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
HNF4AP41235 RNU6-809P-201ENST00000384461 107 ntBASIC3.11□□□□□ -1.91
HNF4AP41235 UBE2FP1-201ENST00000416536 447 ntBASIC3.11□□□□□ -1.91
HNF4AP41235 SDCBPP3-201ENST00000419629 891 ntBASIC3.11□□□□□ -1.91
HNF4AP41235 B3GALNT1P1-201ENST00000420569 975 ntBASIC3.11□□□□□ -1.91
HNF4AP41235 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC3.11□□□□□ -1.91
HNF4AP41235 AC009414.1-201ENST00000427200 443 ntBASIC3.11□□□□□ -1.91
HNF4AP41235 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC3.11□□□□□ -1.91
HNF4AP41235 MTND1P34-201ENST00000438556 671 ntBASIC3.11□□□□□ -1.91
HNF4AP41235 RPL7P36-201ENST00000444633 681 ntBASIC3.11□□□□□ -1.91
HNF4AP41235 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC3.11□□□□□ -1.91
HNF4AP41235 ELOCP23-201ENST00000452014 332 ntBASIC3.11□□□□□ -1.91
HNF4AP41235 RPL27AP5-201ENST00000469428 449 ntBASIC3.11□□□□□ -1.91
HNF4AP41235 AC011825.1-201ENST00000484967 388 ntBASIC3.11□□□□□ -1.91
HNF4AP41235 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC3.11□□□□□ -1.91
HNF4AP41235 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC3.11□□□□□ -1.91
HNF4AP41235 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC3.11□□□□□ -1.91
HNF4AP41235 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.11□□□□□ -1.91
HNF4AP41235 RNU1-143P-201ENST00000516296 146 ntBASIC3.11□□□□□ -1.91
HNF4AP41235 SUB1P1-201ENST00000524415 382 ntBASIC3.11□□□□□ -1.91
HNF4AP41235 MTND4LP18-201ENST00000526864 291 ntBASIC3.11□□□□□ -1.91
HNF4AP41235 ZDHHC20P3-201ENST00000531576 336 ntBASIC3.11□□□□□ -1.91
HNF4AP41235 AC128657.1-201ENST00000549459 145 ntBASIC3.11□□□□□ -1.91
HNF4AP41235 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC3.11□□□□□ -1.91
HNF4AP41235 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC3.11□□□□□ -1.91
HNF4AP41235 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.11□□□□□ -1.91
HNF4AP41235 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 173.6 ms