Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RPS3AP41-201ENST00000462701 778 ntBASIC4.05□□□□□ -1.76
MSX2P35548 AC008481.1-201ENST00000463278 396 ntBASIC4.05□□□□□ -1.76
MSX2P35548 AP000926.1-201ENST00000479573 241 ntBASIC4.05□□□□□ -1.76
MSX2P35548 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC4.05□□□□□ -1.76
MSX2P35548 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC4.05□□□□□ -1.76
MSX2P35548 AC116337.1-201ENST00000509680 687 ntBASIC4.05□□□□□ -1.76
MSX2P35548 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC4.05□□□□□ -1.76
MSX2P35548 SNORA25.10-201ENST00000515926 124 ntBASIC4.05□□□□□ -1.76
MSX2P35548 SNORA14.1-201ENST00000516113 141 ntBASIC4.05□□□□□ -1.76
MSX2P35548 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC4.05□□□□□ -1.76
MSX2P35548 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC4.05□□□□□ -1.76
MSX2P35548 MIR3667-201ENST00000581025 74 ntBASIC4.05□□□□□ -1.76
MSX2P35548 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC4.05□□□□□ -1.76
MSX2P35548 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.05□□□□□ -1.76
MSX2P35548 U4.1-201ENST00000620349 87 ntBASIC4.05□□□□□ -1.76
MSX2P35548 AL589994.2-201ENST00000621124 579 ntBASIC4.05□□□□□ -1.76
MSX2P35548 AL137003.2-201ENST00000606924 2538 ntBASIC4.05□□□□□ -1.76
MSX2P35548 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
MSX2P35548 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
MSX2P35548 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.05□□□□□ -1.76
MSX2P35548 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
MSX2P35548 DPY19L2P2-203ENST00000435536 1858 ntBASIC4.05□□□□□ -1.76
MSX2P35548 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
MSX2P35548 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.04□□□□□ -1.76
MSX2P35548 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC4.04□□□□□ -1.76
MSX2P35548 Y_RNA.149-201ENST00000363558 117 ntBASIC4.04□□□□□ -1.76
MSX2P35548 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
MSX2P35548 RNY1P14-201ENST00000384426 108 ntBASIC4.04□□□□□ -1.76
MSX2P35548 MT-TG-201ENST00000387429 68 ntBASIC4.04□□□□□ -1.76
MSX2P35548 MT-TR-201ENST00000387439 65 ntBASIC4.04□□□□□ -1.76
MSX2P35548 SDHCP2-201ENST00000398565 501 ntBASIC4.04□□□□□ -1.76
MSX2P35548 AL583834.1-201ENST00000406943 343 ntBASIC4.04□□□□□ -1.76
MSX2P35548 AC092447.6-201ENST00000414578 210 ntBASIC4.04□□□□□ -1.76
MSX2P35548 COX6B1P1-201ENST00000415962 213 ntBASIC4.04□□□□□ -1.76
MSX2P35548 RPL7P37-201ENST00000425095 738 ntBASIC4.04□□□□□ -1.76
MSX2P35548 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC4.04□□□□□ -1.76
MSX2P35548 AC092017.2-201ENST00000427600 362 ntBASIC4.04□□□□□ -1.76
MSX2P35548 MTCO3P45-201ENST00000443036 613 ntBASIC4.04□□□□□ -1.76
MSX2P35548 RPL12P25-201ENST00000455592 494 ntBASIC4.04□□□□□ -1.76
MSX2P35548 RNU7-167P-201ENST00000459160 62 ntBASIC4.04□□□□□ -1.76
MSX2P35548 AP000873.1-201ENST00000463987 400 ntBASIC4.04□□□□□ -1.76
MSX2P35548 RPS29P22-201ENST00000472363 168 ntBASIC4.04□□□□□ -1.76
MSX2P35548 HMGB1P30-201ENST00000492455 606 ntBASIC4.04□□□□□ -1.76
MSX2P35548 AC078817.1-201ENST00000492623 435 ntBASIC4.04□□□□□ -1.76
MSX2P35548 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC4.04□□□□□ -1.76
MSX2P35548 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC4.04□□□□□ -1.76
MSX2P35548 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC4.04□□□□□ -1.76
MSX2P35548 TBCAP3-201ENST00000512475 312 ntBASIC4.04□□□□□ -1.76
MSX2P35548 AC026782.1-201ENST00000512952 449 ntBASIC4.04□□□□□ -1.76
MSX2P35548 HMGN1P28-201ENST00000521340 364 ntBASIC4.04□□□□□ -1.76
MSX2P35548 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
MSX2P35548 AP001781.1-201ENST00000530977 207 ntBASIC4.04□□□□□ -1.76
MSX2P35548 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.04□□□□□ -1.76
MSX2P35548 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.04□□□□□ -1.76
MSX2P35548 AC106782.4-201ENST00000568264 210 ntBASIC4.04□□□□□ -1.76
MSX2P35548 AC010653.1-201ENST00000571108 881 ntBASIC4.04□□□□□ -1.76
MSX2P35548 MIR3941-201ENST00000582572 103 ntBASIC4.04□□□□□ -1.76
MSX2P35548 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC4.04□□□□□ -1.76
MSX2P35548 AL138889.2-201ENST00000603883 242 ntBASIC4.04□□□□□ -1.76
MSX2P35548 U2.17-201ENST00000611454 95 ntBASIC4.04□□□□□ -1.76
MSX2P35548 AC004696.1-201ENST00000614345 607 ntBASIC4.04□□□□□ -1.76
MSX2P35548 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC4.04□□□□□ -1.76
MSX2P35548 MIR6128-201ENST00000615528 109 ntBASIC4.04□□□□□ -1.76
MSX2P35548 DLEU2_5.1-201ENST00000615567 84 ntBASIC4.04□□□□□ -1.76
MSX2P35548 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.04□□□□□ -1.76
MSX2P35548 AC110801.1-201ENST00000623590 212 ntBASIC4.04□□□□□ -1.76
MSX2P35548 AC092608.2-201ENST00000624427 218 ntBASIC4.04□□□□□ -1.76
MSX2P35548 Z69720.2-201ENST00000624755 279 ntBASIC4.04□□□□□ -1.76
MSX2P35548 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
MSX2P35548 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
MSX2P35548 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.04□□□□□ -1.76
MSX2P35548 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
MSX2P35548 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
MSX2P35548 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.04□□□□□ -1.76
MSX2P35548 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.03□□□□□ -1.76
MSX2P35548 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
MSX2P35548 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
MSX2P35548 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
MSX2P35548 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC4.03□□□□□ -1.76
MSX2P35548 Y_RNA.47-201ENST00000362697 108 ntBASIC4.03□□□□□ -1.76
MSX2P35548 Y_RNA.364-201ENST00000365532 101 ntBASIC4.03□□□□□ -1.76
MSX2P35548 Y_RNA.404-201ENST00000383978 102 ntBASIC4.03□□□□□ -1.76
MSX2P35548 Y_RNA.496-201ENST00000384444 101 ntBASIC4.03□□□□□ -1.76
MSX2P35548 Y_RNA.527-201ENST00000384573 102 ntBASIC4.03□□□□□ -1.76
MSX2P35548 MIR3074-201ENST00000384885 81 ntBASIC4.03□□□□□ -1.76
MSX2P35548 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
MSX2P35548 SNORA75.6-201ENST00000391318 127 ntBASIC4.03□□□□□ -1.76
MSX2P35548 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
MSX2P35548 RNU4-6P-201ENST00000410804 122 ntBASIC4.03□□□□□ -1.76
MSX2P35548 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC4.03□□□□□ -1.76
MSX2P35548 AC016397.1-201ENST00000412463 242 ntBASIC4.03□□□□□ -1.76
MSX2P35548 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC4.03□□□□□ -1.76
MSX2P35548 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC4.03□□□□□ -1.76
MSX2P35548 AL590632.1-201ENST00000424289 371 ntBASIC4.03□□□□□ -1.76
MSX2P35548 AL669831.1-202ENST00000428504 417 ntBASIC4.03□□□□□ -1.76
MSX2P35548 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC4.03□□□□□ -1.76
MSX2P35548 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC4.03□□□□□ -1.76
MSX2P35548 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC4.03□□□□□ -1.76
MSX2P35548 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC4.03□□□□□ -1.76
MSX2P35548 AC104472.2-201ENST00000469035 601 ntBASIC4.03□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 94.8 ms