Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC5.74□□□□□ -1.49
COL9A1P20849 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
COL9A1P20849 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL9A1P20849 TLR10-201ENST00000308973 3958 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
COL9A1P20849 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL9A1P20849 OLFM4-201ENST00000219022 2897 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL9A1P20849 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL9A1P20849 CCDC186-203ENST00000369287 7245 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL9A1P20849 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.73□□□□□ -1.49
COL9A1P20849 ANKRD30BP1-201ENST00000451052 2186 ntBASIC5.73□□□□□ -1.49
COL9A1P20849 AC005821.1-203ENST00000577270 3145 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
COL9A1P20849 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
COL9A1P20849 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC5.73□□□□□ -1.49
COL9A1P20849 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.73□□□□□ -1.49
COL9A1P20849 MIR130A-201ENST00000385274 89 ntBASIC5.73□□□□□ -1.49
COL9A1P20849 U3.22-201ENST00000391120 215 ntBASIC5.73□□□□□ -1.49
COL9A1P20849 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC5.73□□□□□ -1.49
COL9A1P20849 MTATP6P7-201ENST00000453315 681 ntBASIC5.73□□□□□ -1.49
COL9A1P20849 ANP32BP2-201ENST00000454525 545 ntBASIC5.73□□□□□ -1.49
COL9A1P20849 snoU109.2-201ENST00000459316 135 ntBASIC5.73□□□□□ -1.49
COL9A1P20849 RNU6-625P-201ENST00000459412 107 ntBASIC5.73□□□□□ -1.49
COL9A1P20849 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC5.73□□□□□ -1.49
COL9A1P20849 AL049874.1-201ENST00000489560 388 ntBASIC5.73□□□□□ -1.49
COL9A1P20849 RPL36AP41-201ENST00000493820 306 ntBASIC5.73□□□□□ -1.49
COL9A1P20849 AC006499.6-201ENST00000511169 607 ntBASIC5.73□□□□□ -1.49
COL9A1P20849 RNU6-155P-201ENST00000516347 100 ntBASIC5.73□□□□□ -1.49
COL9A1P20849 RN7SKP234-201ENST00000517173 224 ntBASIC5.73□□□□□ -1.49
COL9A1P20849 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC5.73□□□□□ -1.49
COL9A1P20849 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC5.73□□□□□ -1.49
COL9A1P20849 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC5.73□□□□□ -1.49
COL9A1P20849 ZNF192P1-203ENST00000565888 810 ntBASIC5.73□□□□□ -1.49
COL9A1P20849 MIR4512-201ENST00000583257 77 ntBASIC5.73□□□□□ -1.49
COL9A1P20849 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC5.73□□□□□ -1.49
COL9A1P20849 AC010999.1-201ENST00000611856 324 ntBASIC5.73□□□□□ -1.49
COL9A1P20849 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC5.73□□□□□ -1.49
COL9A1P20849 AC092070.2-203ENST00000598377 3644 ntBASIC5.73□□□□□ -1.49
COL9A1P20849 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
COL9A1P20849 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL9A1P20849 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL9A1P20849 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL9A1P20849 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL9A1P20849 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.72□□□□□ -1.49
COL9A1P20849 MIR208A-201ENST00000362287 71 ntBASIC5.72□□□□□ -1.49
COL9A1P20849 Y_RNA.101-201ENST00000363154 102 ntBASIC5.72□□□□□ -1.49
COL9A1P20849 RNU6-1310P-201ENST00000384153 107 ntBASIC5.72□□□□□ -1.49
COL9A1P20849 RNA5SP339-201ENST00000390987 122 ntBASIC5.72□□□□□ -1.49
COL9A1P20849 RNU6-1245P-201ENST00000411130 106 ntBASIC5.72□□□□□ -1.49
COL9A1P20849 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC5.72□□□□□ -1.49
COL9A1P20849 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC5.72□□□□□ -1.49
COL9A1P20849 AC010095.1-201ENST00000443543 144 ntBASIC5.72□□□□□ -1.49
COL9A1P20849 RNU1-88P-201ENST00000459274 128 ntBASIC5.72□□□□□ -1.49
COL9A1P20849 AC092991.1-201ENST00000477176 376 ntBASIC5.72□□□□□ -1.49
COL9A1P20849 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
COL9A1P20849 RNU2-56P-201ENST00000516826 190 ntBASIC5.72□□□□□ -1.49
COL9A1P20849 NACAP3-201ENST00000552100 481 ntBASIC5.72□□□□□ -1.49
COL9A1P20849 MTND5P34-201ENST00000568888 325 ntBASIC5.72□□□□□ -1.49
COL9A1P20849 MIR4277-201ENST00000578298 84 ntBASIC5.72□□□□□ -1.49
COL9A1P20849 MIR4716-201ENST00000579628 84 ntBASIC5.72□□□□□ -1.49
COL9A1P20849 MIR5582-201ENST00000579697 68 ntBASIC5.72□□□□□ -1.49
COL9A1P20849 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
COL9A1P20849 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL9A1P20849 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL9A1P20849 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC5.72□□□□□ -1.49
COL9A1P20849 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
COL9A1P20849 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL9A1P20849 DGKB-202ENST00000402815 5595 ntAPPRIS ALT1 TSL 5 BASIC5.72□□□□□ -1.49
COL9A1P20849 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL9A1P20849 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
COL9A1P20849 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC5.72□□□□□ -1.49
COL9A1P20849 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC5.72□□□□□ -1.49
COL9A1P20849 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL9A1P20849 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL9A1P20849 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL9A1P20849 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC5.72□□□□□ -1.49
COL9A1P20849 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC5.71□□□□□ -1.5
COL9A1P20849 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
COL9A1P20849 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
COL9A1P20849 RNA5SP332-201ENST00000391063 115 ntBASIC5.71□□□□□ -1.5
COL9A1P20849 RNU6ATAC19P-201ENST00000408096 110 ntBASIC5.71□□□□□ -1.5
COL9A1P20849 AL138785.1-201ENST00000425821 331 ntBASIC5.71□□□□□ -1.5
COL9A1P20849 AC091390.3-201ENST00000426478 338 ntBASIC5.71□□□□□ -1.5
COL9A1P20849 AL590399.6-201ENST00000446396 307 ntBASIC5.71□□□□□ -1.5
COL9A1P20849 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC5.71□□□□□ -1.5
COL9A1P20849 AC018448.1-201ENST00000552843 316 ntBASIC5.71□□□□□ -1.5
COL9A1P20849 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC5.71□□□□□ -1.5
COL9A1P20849 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC5.71□□□□□ -1.5
COL9A1P20849 AC024153.1-201ENST00000603103 365 ntBASIC5.71□□□□□ -1.5
COL9A1P20849 AC024220.1-201ENST00000603675 484 ntBASIC5.71□□□□□ -1.5
COL9A1P20849 AC090607.5-201ENST00000615692 224 ntBASIC5.71□□□□□ -1.5
COL9A1P20849 AC131238.1-201ENST00000617135 328 ntBASIC5.71□□□□□ -1.5
COL9A1P20849 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC5.71□□□□□ -1.5
COL9A1P20849 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL9A1P20849 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC5.71□□□□□ -1.5
COL9A1P20849 PDE1C-203ENST00000396184 8852 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
COL9A1P20849 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
COL9A1P20849 GABRB2-201ENST00000274547 7409 ntTSL 5 BASIC5.71□□□□□ -1.5
COL9A1P20849 AK9-203ENST00000368948 2478 ntTSL 5 BASIC5.71□□□□□ -1.5
COL9A1P20849 MUC5AC-201ENST00000621226 17448 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
COL9A1P20849 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL9A1P20849 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms