Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 AL670379.4-201ENST00000605279 254 ntBASIC5.09□□□□□ -1.59
LIG1P18858 AC006329.2-201ENST00000611491 394 ntBASIC5.09□□□□□ -1.59
LIG1P18858 AC007546.2-201ENST00000623996 360 ntBASIC5.09□□□□□ -1.59
LIG1P18858 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC5.09□□□□□ -1.59
LIG1P18858 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
LIG1P18858 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.6
LIG1P18858 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
LIG1P18858 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC5.09□□□□□ -1.6
LIG1P18858 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
LIG1P18858 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
LIG1P18858 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
LIG1P18858 AL359893.1-201ENST00000447628 1580 ntBASIC5.08□□□□□ -1.6
LIG1P18858 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
LIG1P18858 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
LIG1P18858 AC011266.1-201ENST00000624119 3569 ntBASIC5.08□□□□□ -1.6
LIG1P18858 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
LIG1P18858 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
LIG1P18858 RNU1-15P-201ENST00000353977 144 ntBASIC5.08□□□□□ -1.6
LIG1P18858 RNA5SP307-201ENST00000362863 116 ntBASIC5.08□□□□□ -1.6
LIG1P18858 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
LIG1P18858 NDUFS5P1-201ENST00000405668 289 ntBASIC5.08□□□□□ -1.6
LIG1P18858 MAP1LC3BP1-201ENST00000417653 379 ntBASIC5.08□□□□□ -1.6
LIG1P18858 CKS1BP5-201ENST00000434172 273 ntBASIC5.08□□□□□ -1.6
LIG1P18858 AC007967.1-201ENST00000455422 1159 ntBASIC5.08□□□□□ -1.6
LIG1P18858 snoU13.1-201ENST00000459157 104 ntBASIC5.08□□□□□ -1.6
LIG1P18858 AC092451.1-201ENST00000480211 153 ntBASIC5.08□□□□□ -1.6
LIG1P18858 AF213884.1-201ENST00000488102 463 ntBASIC5.08□□□□□ -1.6
LIG1P18858 AC026801.1-201ENST00000497178 464 ntBASIC5.08□□□□□ -1.6
LIG1P18858 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC5.08□□□□□ -1.6
LIG1P18858 OR51K1P-201ENST00000510214 950 ntBASIC5.08□□□□□ -1.6
LIG1P18858 RNA5SP309-201ENST00000516670 106 ntBASIC5.08□□□□□ -1.6
LIG1P18858 SNORD116.3-201ENST00000517176 78 ntBASIC5.08□□□□□ -1.6
LIG1P18858 Y_RNA.721-201ENST00000517207 102 ntBASIC5.08□□□□□ -1.6
LIG1P18858 AC087854.1-201ENST00000519706 414 ntBASIC5.08□□□□□ -1.6
LIG1P18858 IL7-206ENST00000520269 456 ntTSL 3 BASIC5.08□□□□□ -1.6
LIG1P18858 CYCSP27-201ENST00000527643 293 ntBASIC5.08□□□□□ -1.6
LIG1P18858 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC5.08□□□□□ -1.6
LIG1P18858 CR383656.7-201ENST00000548164 174 ntBASIC5.08□□□□□ -1.6
LIG1P18858 RPL23AP84-201ENST00000571193 464 ntBASIC5.08□□□□□ -1.6
LIG1P18858 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC5.08□□□□□ -1.6
LIG1P18858 RN7SL690P-201ENST00000582087 240 ntBASIC5.08□□□□□ -1.6
LIG1P18858 AC018889.1-201ENST00000605372 397 ntBASIC5.08□□□□□ -1.6
LIG1P18858 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC5.08□□□□□ -1.6
LIG1P18858 TUG1_2.1-201ENST00000614234 87 ntBASIC5.08□□□□□ -1.6
LIG1P18858 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC5.08□□□□□ -1.6
LIG1P18858 SMCR2_2.1-201ENST00000619783 161 ntBASIC5.08□□□□□ -1.6
LIG1P18858 AL589994.2-201ENST00000621124 579 ntBASIC5.08□□□□□ -1.6
LIG1P18858 AC007998.5-201ENST00000622938 237 ntBASIC5.08□□□□□ -1.6
LIG1P18858 AC110801.1-201ENST00000623590 212 ntBASIC5.08□□□□□ -1.6
LIG1P18858 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC5.08□□□□□ -1.6
LIG1P18858 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC5.08□□□□□ -1.6
LIG1P18858 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
LIG1P18858 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC5.08□□□□□ -1.6
LIG1P18858 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC5.08□□□□□ -1.6
LIG1P18858 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC5.08□□□□□ -1.6
LIG1P18858 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC5.08□□□□□ -1.6
LIG1P18858 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
LIG1P18858 CDC27P3-201ENST00000635418 1910 ntBASIC5.07□□□□□ -1.6
LIG1P18858 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC5.07□□□□□ -1.6
LIG1P18858 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC5.07□□□□□ -1.6
LIG1P18858 ANKRD26P2-201ENST00000445530 1710 ntBASIC5.07□□□□□ -1.6
LIG1P18858 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
LIG1P18858 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
LIG1P18858 AC007685.1-201ENST00000329806 452 ntBASIC5.07□□□□□ -1.6
LIG1P18858 RNU6-379P-201ENST00000363813 104 ntBASIC5.07□□□□□ -1.6
LIG1P18858 SNORD113.2-201ENST00000364166 89 ntBASIC5.07□□□□□ -1.6
LIG1P18858 Y_RNA.428-201ENST00000384078 102 ntBASIC5.07□□□□□ -1.6
LIG1P18858 SNORA70F-201ENST00000384142 135 ntBASIC5.07□□□□□ -1.6
LIG1P18858 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC5.07□□□□□ -1.6
LIG1P18858 SNORA74C-2-201ENST00000411179 201 ntBASIC5.07□□□□□ -1.6
LIG1P18858 AC016397.1-201ENST00000412463 242 ntBASIC5.07□□□□□ -1.6
LIG1P18858 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC5.07□□□□□ -1.6
LIG1P18858 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC5.07□□□□□ -1.6
LIG1P18858 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC5.07□□□□□ -1.6
LIG1P18858 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC5.07□□□□□ -1.6
LIG1P18858 DPH3P2-201ENST00000422618 250 ntBASIC5.07□□□□□ -1.6
LIG1P18858 AL590632.1-201ENST00000424289 371 ntBASIC5.07□□□□□ -1.6
LIG1P18858 RPEP3-201ENST00000425462 676 ntBASIC5.07□□□□□ -1.6
LIG1P18858 AC068287.1-201ENST00000430283 295 ntBASIC5.07□□□□□ -1.6
LIG1P18858 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC5.07□□□□□ -1.6
LIG1P18858 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC5.07□□□□□ -1.6
LIG1P18858 RPL23AP93-201ENST00000440847 484 ntBASIC5.07□□□□□ -1.6
LIG1P18858 MTCO3P45-201ENST00000443036 613 ntBASIC5.07□□□□□ -1.6
LIG1P18858 AL162389.1-201ENST00000449233 177 ntBASIC5.07□□□□□ -1.6
LIG1P18858 BX276092.4-201ENST00000452056 248 ntBASIC5.07□□□□□ -1.6
LIG1P18858 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC5.07□□□□□ -1.6
LIG1P18858 AC008481.1-201ENST00000463278 396 ntBASIC5.07□□□□□ -1.6
LIG1P18858 HMGB1P25-201ENST00000468402 607 ntBASIC5.07□□□□□ -1.6
LIG1P18858 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC5.07□□□□□ -1.6
LIG1P18858 Y_RNA.668-201ENST00000516233 93 ntBASIC5.07□□□□□ -1.6
LIG1P18858 RNU6-1332P-201ENST00000516666 104 ntBASIC5.07□□□□□ -1.6
LIG1P18858 RAB9BP1-201ENST00000519581 626 ntBASIC5.07□□□□□ -1.6
LIG1P18858 AC103783.1-201ENST00000520506 373 ntBASIC5.07□□□□□ -1.6
LIG1P18858 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC5.07□□□□□ -1.6
LIG1P18858 AP005902.1-201ENST00000521358 186 ntBASIC5.07□□□□□ -1.6
LIG1P18858 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC5.07□□□□□ -1.6
LIG1P18858 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC5.07□□□□□ -1.6
LIG1P18858 AC100812.1-201ENST00000607622 580 ntBASIC5.07□□□□□ -1.6
LIG1P18858 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC5.07□□□□□ -1.6
LIG1P18858 MIR6891-201ENST00000618788 93 ntBASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms