Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 MIR548H3-201ENST00000408771 118 ntBASIC4.34□□□□□ -1.71
TRIM13O60858 RNU2-15P-201ENST00000410692 191 ntBASIC4.34□□□□□ -1.71
TRIM13O60858 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.34□□□□□ -1.71
TRIM13O60858 RPL30P2-201ENST00000414021 291 ntBASIC4.34□□□□□ -1.71
TRIM13O60858 RPL23AP27-201ENST00000415161 451 ntBASIC4.34□□□□□ -1.71
TRIM13O60858 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC4.34□□□□□ -1.71
TRIM13O60858 RPL23AP69-201ENST00000431134 458 ntBASIC4.34□□□□□ -1.71
TRIM13O60858 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC4.34□□□□□ -1.71
TRIM13O60858 AC007967.1-201ENST00000455422 1159 ntBASIC4.34□□□□□ -1.71
TRIM13O60858 RPL9P32-201ENST00000464118 620 ntBASIC4.34□□□□□ -1.71
TRIM13O60858 AC087385.1-201ENST00000475062 312 ntBASIC4.34□□□□□ -1.71
TRIM13O60858 AC025445.1-201ENST00000502728 300 ntBASIC4.34□□□□□ -1.71
TRIM13O60858 AC083829.1-201ENST00000503756 657 ntBASIC4.34□□□□□ -1.71
TRIM13O60858 AC105758.1-201ENST00000506038 399 ntBASIC4.34□□□□□ -1.71
TRIM13O60858 RN7SKP277-201ENST00000516895 283 ntBASIC4.34□□□□□ -1.71
TRIM13O60858 IL7-206ENST00000520269 456 ntTSL 3 BASIC4.34□□□□□ -1.71
TRIM13O60858 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC4.34□□□□□ -1.71
TRIM13O60858 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC4.34□□□□□ -1.71
TRIM13O60858 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC4.34□□□□□ -1.71
TRIM13O60858 AC104763.2-201ENST00000604179 382 ntBASIC4.34□□□□□ -1.71
TRIM13O60858 U2.17-201ENST00000611454 95 ntBASIC4.34□□□□□ -1.71
TRIM13O60858 AL161423.1-201ENST00000613700 262 ntBASIC4.34□□□□□ -1.71
TRIM13O60858 MAPK10-304ENST00000641341 3984 ntBASIC4.34□□□□□ -1.71
TRIM13O60858 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
TRIM13O60858 PABPC1P7-201ENST00000413177 1513 ntBASIC4.34□□□□□ -1.71
TRIM13O60858 AC008669.1-201ENST00000565823 2178 ntBASIC4.34□□□□□ -1.72
TRIM13O60858 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.34□□□□□ -1.72
TRIM13O60858 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.34□□□□□ -1.72
TRIM13O60858 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.33□□□□□ -1.72
TRIM13O60858 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.33□□□□□ -1.72
TRIM13O60858 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
TRIM13O60858 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
TRIM13O60858 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
TRIM13O60858 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
TRIM13O60858 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC4.33□□□□□ -1.72
TRIM13O60858 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC4.33□□□□□ -1.72
TRIM13O60858 AC090971.4-201ENST00000560291 1800 ntBASIC4.33□□□□□ -1.72
TRIM13O60858 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
TRIM13O60858 IQCB2P-201ENST00000401788 1633 ntBASIC4.33□□□□□ -1.72
TRIM13O60858 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
TRIM13O60858 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
TRIM13O60858 Y_RNA.19-201ENST00000362462 99 ntBASIC4.33□□□□□ -1.72
TRIM13O60858 RNU6-1059P-201ENST00000363752 98 ntBASIC4.33□□□□□ -1.72
TRIM13O60858 SNORD27-201ENST00000363981 72 ntBASIC4.33□□□□□ -1.72
TRIM13O60858 RNU6-188P-201ENST00000364207 107 ntBASIC4.33□□□□□ -1.72
TRIM13O60858 Y_RNA.297-201ENST00000364950 91 ntBASIC4.33□□□□□ -1.72
TRIM13O60858 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC4.33□□□□□ -1.72
TRIM13O60858 Y_RNA.399-201ENST00000383955 105 ntBASIC4.33□□□□□ -1.72
TRIM13O60858 RNU6-125P-201ENST00000384505 107 ntBASIC4.33□□□□□ -1.72
TRIM13O60858 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
TRIM13O60858 AC097374.1-203ENST00000400783 485 ntBASIC4.33□□□□□ -1.72
TRIM13O60858 HMGN1P24-201ENST00000412282 298 ntBASIC4.33□□□□□ -1.72
TRIM13O60858 RPS20P14-201ENST00000412545 360 ntBASIC4.33□□□□□ -1.72
TRIM13O60858 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC4.33□□□□□ -1.72
TRIM13O60858 RPL21P112-201ENST00000434403 463 ntBASIC4.33□□□□□ -1.72
TRIM13O60858 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.33□□□□□ -1.72
TRIM13O60858 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC4.33□□□□□ -1.72
TRIM13O60858 AC069285.2-201ENST00000440210 275 ntBASIC4.33□□□□□ -1.72
TRIM13O60858 AC098831.1-201ENST00000440661 216 ntBASIC4.33□□□□□ -1.72
TRIM13O60858 TMSB4XP3-201ENST00000445144 114 ntBASIC4.33□□□□□ -1.72
TRIM13O60858 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
TRIM13O60858 FCF1P4-201ENST00000448326 183 ntBASIC4.33□□□□□ -1.72
TRIM13O60858 AC013470.1-201ENST00000453438 462 ntBASIC4.33□□□□□ -1.72
TRIM13O60858 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC4.33□□□□□ -1.72
TRIM13O60858 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC4.33□□□□□ -1.72
TRIM13O60858 RNU7-59P-201ENST00000459101 61 ntBASIC4.33□□□□□ -1.72
TRIM13O60858 RPL7AP6-201ENST00000477943 801 ntBASIC4.33□□□□□ -1.72
TRIM13O60858 OR51K1P-201ENST00000510214 950 ntBASIC4.33□□□□□ -1.72
TRIM13O60858 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC4.33□□□□□ -1.72
TRIM13O60858 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.33□□□□□ -1.72
TRIM13O60858 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC4.33□□□□□ -1.72
TRIM13O60858 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC4.33□□□□□ -1.72
TRIM13O60858 HMGN2P28-201ENST00000606102 262 ntBASIC4.33□□□□□ -1.72
TRIM13O60858 MIR432-201ENST00000606207 94 ntBASIC4.33□□□□□ -1.72
TRIM13O60858 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
TRIM13O60858 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
TRIM13O60858 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
TRIM13O60858 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
TRIM13O60858 SDAD1P1-202ENST00000524156 2051 ntBASIC4.33□□□□□ -1.72
TRIM13O60858 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.33□□□□□ -1.72
TRIM13O60858 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.33□□□□□ -1.72
TRIM13O60858 AL049555.1-201ENST00000562834 1933 ntBASIC4.33□□□□□ -1.72
TRIM13O60858 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
TRIM13O60858 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
TRIM13O60858 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.32□□□□□ -1.72
TRIM13O60858 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
TRIM13O60858 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
TRIM13O60858 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
TRIM13O60858 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.32□□□□□ -1.72
TRIM13O60858 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.32□□□□□ -1.72
TRIM13O60858 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC4.32□□□□□ -1.72
TRIM13O60858 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
TRIM13O60858 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.32□□□□□ -1.72
TRIM13O60858 RNY1-201ENST00000364228 113 ntBASIC4.32□□□□□ -1.72
TRIM13O60858 RNU4-42P-201ENST00000364738 142 ntBASIC4.32□□□□□ -1.72
TRIM13O60858 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC4.32□□□□□ -1.72
TRIM13O60858 RNU6-190P-201ENST00000384154 102 ntBASIC4.32□□□□□ -1.72
TRIM13O60858 RNU6-842P-201ENST00000384269 107 ntBASIC4.32□□□□□ -1.72
TRIM13O60858 SNORA16.2-201ENST00000390991 127 ntBASIC4.32□□□□□ -1.72
TRIM13O60858 RNA5SP104-201ENST00000410989 118 ntBASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 93.3 ms