Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AC105137.2-201ENST00000569073 466 ntBASIC8.67□□□□□ -1.02
MSH5O43196 AC020914.7-201ENST00000594477 545 ntBASIC8.67□□□□□ -1.02
MSH5O43196 AC019159.1-201ENST00000605094 187 ntBASIC8.67□□□□□ -1.02
MSH5O43196 SNORD11B-201ENST00000607707 90 ntBASIC8.67□□□□□ -1.02
MSH5O43196 CENPJ-206ENST00000616936 5020 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
MSH5O43196 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
MSH5O43196 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC8.67□□□□□ -1.02
MSH5O43196 SFTPD-AS1-201ENST00000608229 5001 ntBASIC8.66□□□□□ -1.02
MSH5O43196 ERG-202ENST00000398897 4651 ntTSL 5 BASIC8.66□□□□□ -1.02
MSH5O43196 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC8.66□□□□□ -1.02
MSH5O43196 STK32A-202ENST00000397936 5393 ntAPPRIS P1 TSL 5 BASIC8.66□□□□□ -1.02
MSH5O43196 CARD8-202ENST00000391898 5263 ntAPPRIS ALT2 TSL 1 (best) BASIC8.66□□□□□ -1.02
MSH5O43196 PDE4DIP-204ENST00000369351 4922 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
MSH5O43196 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
MSH5O43196 BDNF-217ENST00000533131 3878 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
MSH5O43196 RNA5SP321-201ENST00000362722 111 ntBASIC8.66□□□□□ -1.02
MSH5O43196 U3.8-201ENST00000363675 217 ntBASIC8.66□□□□□ -1.02
MSH5O43196 RN7SKP69-201ENST00000365390 305 ntBASIC8.66□□□□□ -1.02
MSH5O43196 MRPS21P5-201ENST00000417885 231 ntBASIC8.66□□□□□ -1.02
MSH5O43196 COX4I1P2-201ENST00000447446 547 ntBASIC8.66□□□□□ -1.02
MSH5O43196 RN7SL254P-201ENST00000460609 284 ntBASIC8.66□□□□□ -1.02
MSH5O43196 TOMM22P4-201ENST00000511318 336 ntBASIC8.66□□□□□ -1.02
MSH5O43196 AC002401.2-201ENST00000511361 430 ntTSL 3 BASIC8.66□□□□□ -1.02
MSH5O43196 RNU1-117P-201ENST00000517041 158 ntBASIC8.66□□□□□ -1.02
MSH5O43196 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC8.66□□□□□ -1.02
MSH5O43196 MIR3134-201ENST00000579433 74 ntBASIC8.66□□□□□ -1.02
MSH5O43196 ELOCP29-201ENST00000588193 334 ntBASIC8.66□□□□□ -1.02
MSH5O43196 RNU6-84P-201ENST00000607737 102 ntBASIC8.66□□□□□ -1.02
MSH5O43196 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
MSH5O43196 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
MSH5O43196 STT3A-214ENST00000531491 2160 ntTSL 2 BASIC8.66□□□□□ -1.02
MSH5O43196 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
MSH5O43196 AC005332.9-201ENST00000620266 2921 ntBASIC8.66□□□□□ -1.02
MSH5O43196 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
MSH5O43196 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC8.66□□□□□ -1.02
MSH5O43196 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
MSH5O43196 CX3CR1-202ENST00000399220 3106 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
MSH5O43196 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
MSH5O43196 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC8.65□□□□□ -1.02
MSH5O43196 NIN-204ENST00000382043 4216 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
MSH5O43196 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
MSH5O43196 AC011455.2-201ENST00000599320 3336 ntBASIC8.65□□□□□ -1.02
MSH5O43196 PPIAP24-201ENST00000328558 471 ntBASIC8.65□□□□□ -1.02
MSH5O43196 RNA5SP510-201ENST00000364697 99 ntBASIC8.65□□□□□ -1.02
MSH5O43196 SNORD58A-201ENST00000383875 65 ntBASIC8.65□□□□□ -1.02
MSH5O43196 U8.17-201ENST00000391292 132 ntBASIC8.65□□□□□ -1.02
MSH5O43196 RN7SKP271-201ENST00000410528 320 ntBASIC8.65□□□□□ -1.02
MSH5O43196 AC098614.2-201ENST00000426040 255 ntBASIC8.65□□□□□ -1.02
MSH5O43196 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
MSH5O43196 RNU7-164P-201ENST00000459221 62 ntBASIC8.65□□□□□ -1.02
MSH5O43196 RPL23AP91-201ENST00000569211 455 ntBASIC8.65□□□□□ -1.02
MSH5O43196 MIR3135A-201ENST00000578460 77 ntBASIC8.65□□□□□ -1.02
MSH5O43196 MIR3614-201ENST00000581261 86 ntBASIC8.65□□□□□ -1.02
MSH5O43196 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC8.65□□□□□ -1.02
MSH5O43196 AC008752.2-201ENST00000591174 750 ntTSL 3 BASIC8.65□□□□□ -1.02
MSH5O43196 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC8.65□□□□□ -1.02
MSH5O43196 MIR6886-201ENST00000619864 61 ntBASIC8.65□□□□□ -1.02
MSH5O43196 SORBS2-230ENST00000448662 4356 ntTSL 2 BASIC8.65□□□□□ -1.02
MSH5O43196 GAPVD1-203ENST00000312123 4320 ntAPPRIS ALT1 TSL 1 (best) BASIC8.65□□□□□ -1.02
MSH5O43196 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC8.65□□□□□ -1.02
MSH5O43196 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC8.65□□□□□ -1.03
MSH5O43196 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC8.65□□□□□ -1.03
MSH5O43196 DOCK9-203ENST00000376460 7549 ntAPPRIS P2 TSL 5 BASIC8.65□□□□□ -1.03
MSH5O43196 GUCY1B2-203ENST00000493639 2871 ntTSL 1 (best) BASIC8.65□□□□□ -1.03
MSH5O43196 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC8.65□□□□□ -1.03
MSH5O43196 CNTN3-201ENST00000263665 4948 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.03
MSH5O43196 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC8.65□□□□□ -1.03
MSH5O43196 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC8.65□□□□□ -1.03
MSH5O43196 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC8.65□□□□□ -1.03
MSH5O43196 PDZD2-202ENST00000438447 11704 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.03
MSH5O43196 AL731556.1-201ENST00000394628 3711 ntBASIC8.65□□□□□ -1.03
MSH5O43196 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC8.64□□□□□ -1.03
MSH5O43196 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC8.64□□□□□ -1.03
MSH5O43196 ZNF131-201ENST00000306938 2400 ntAPPRIS P1 TSL 2 BASIC8.64□□□□□ -1.03
MSH5O43196 NCOR1-205ENST00000395857 9501 ntTSL 5 BASIC8.64□□□□□ -1.03
MSH5O43196 TRRAP-202ENST00000359863 12677 ntAPPRIS ALT2 TSL 1 (best) BASIC8.64□□□□□ -1.03
MSH5O43196 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
MSH5O43196 SNURFL-201ENST00000309296 343 ntBASIC8.64□□□□□ -1.03
MSH5O43196 SNORA40.18-201ENST00000391200 128 ntBASIC8.64□□□□□ -1.03
MSH5O43196 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC8.64□□□□□ -1.03
MSH5O43196 FASTKD1-204ENST00000453153 2967 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
MSH5O43196 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC8.64□□□□□ -1.03
MSH5O43196 AC093270.2-201ENST00000486157 792 ntBASIC8.64□□□□□ -1.03
MSH5O43196 NDUFA4P2-201ENST00000489989 244 ntBASIC8.64□□□□□ -1.03
MSH5O43196 RNU7-123P-201ENST00000515911 60 ntBASIC8.64□□□□□ -1.03
MSH5O43196 IGKV2-19-201ENST00000518132 283 ntBASIC8.64□□□□□ -1.03
MSH5O43196 AC011445.2-201ENST00000599274 173 ntBASIC8.64□□□□□ -1.03
MSH5O43196 SNORD96A-201ENST00000606577 79 ntBASIC8.64□□□□□ -1.03
MSH5O43196 AC068205.3-201ENST00000636385 468 ntBASIC8.64□□□□□ -1.03
MSH5O43196 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
MSH5O43196 DOCK11-201ENST00000276202 6625 ntAPPRIS P2 TSL 1 (best) BASIC8.64□□□□□ -1.03
MSH5O43196 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC8.64□□□□□ -1.03
MSH5O43196 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
MSH5O43196 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
MSH5O43196 SMG1P5-202ENST00000529428 4219 ntBASIC8.64□□□□□ -1.03
MSH5O43196 SMG1P2-201ENST00000566127 4221 ntBASIC8.64□□□□□ -1.03
MSH5O43196 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
MSH5O43196 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC8.64□□□□□ -1.03
MSH5O43196 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC8.64□□□□□ -1.03
MSH5O43196 PSD3-218ENST00000523619 8145 ntAPPRIS ALT2 TSL 1 (best) BASIC8.64□□□□□ -1.03
Retrieved 100 of 98,524 protein–RNA pairs in 157.5 ms