Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
USP3Q9Y6I4 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
USP3Q9Y6I4 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC5.16□□□□□ -1.58
USP3Q9Y6I4 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
USP3Q9Y6I4 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
USP3Q9Y6I4 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC5.16□□□□□ -1.58
USP3Q9Y6I4 AC104623.2-202ENST00000623477 4002 ntBASIC5.16□□□□□ -1.58
USP3Q9Y6I4 RNU6-37P-201ENST00000362692 107 ntBASIC5.16□□□□□ -1.58
USP3Q9Y6I4 SNORD50.1-201ENST00000362987 71 ntBASIC5.16□□□□□ -1.58
USP3Q9Y6I4 RNU6-1167P-201ENST00000363227 94 ntBASIC5.16□□□□□ -1.58
USP3Q9Y6I4 RNU6-11P-201ENST00000364234 107 ntBASIC5.16□□□□□ -1.58
USP3Q9Y6I4 RNU6-7-201ENST00000364784 107 ntBASIC5.16□□□□□ -1.58
USP3Q9Y6I4 SNORD113-1-201ENST00000365321 69 ntBASIC5.16□□□□□ -1.58
USP3Q9Y6I4 RNU6-8-201ENST00000365467 107 ntBASIC5.16□□□□□ -1.58
USP3Q9Y6I4 RNU6-827P-201ENST00000365553 106 ntBASIC5.16□□□□□ -1.58
USP3Q9Y6I4 RNU6-25P-201ENST00000383873 107 ntBASIC5.16□□□□□ -1.58
USP3Q9Y6I4 RNU6-1-201ENST00000383898 107 ntBASIC5.16□□□□□ -1.58
USP3Q9Y6I4 RNU6-36P-201ENST00000384172 107 ntBASIC5.16□□□□□ -1.58
USP3Q9Y6I4 RNU6-4P-201ENST00000384205 107 ntBASIC5.16□□□□□ -1.58
USP3Q9Y6I4 RNU6-5P-201ENST00000384238 107 ntBASIC5.16□□□□□ -1.58
USP3Q9Y6I4 RNU6-3P-201ENST00000384314 107 ntBASIC5.16□□□□□ -1.58
USP3Q9Y6I4 RNU6-16P-201ENST00000384385 107 ntBASIC5.16□□□□□ -1.58
USP3Q9Y6I4 RNU6-15P-201ENST00000384534 107 ntBASIC5.16□□□□□ -1.58
USP3Q9Y6I4 RNU6-2-201ENST00000384627 107 ntBASIC5.16□□□□□ -1.58
USP3Q9Y6I4 RNU6-29P-201ENST00000384637 107 ntBASIC5.16□□□□□ -1.58
USP3Q9Y6I4 RNU6-9-201ENST00000384776 107 ntBASIC5.16□□□□□ -1.58
USP3Q9Y6I4 RNU6-1025P-201ENST00000410629 104 ntBASIC5.16□□□□□ -1.58
USP3Q9Y6I4 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC5.16□□□□□ -1.58
USP3Q9Y6I4 TRAPPC2P9-201ENST00000434556 343 ntBASIC5.16□□□□□ -1.58
USP3Q9Y6I4 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
USP3Q9Y6I4 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC5.16□□□□□ -1.58
USP3Q9Y6I4 AL445433.1-201ENST00000457507 257 ntBASIC5.16□□□□□ -1.58
USP3Q9Y6I4 RN7SL517P-201ENST00000462240 305 ntBASIC5.16□□□□□ -1.58
USP3Q9Y6I4 RPL21P13-201ENST00000488305 481 ntBASIC5.16□□□□□ -1.58
USP3Q9Y6I4 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC5.16□□□□□ -1.58
USP3Q9Y6I4 AC010186.2-204ENST00000537668 439 ntBASIC5.16□□□□□ -1.58
USP3Q9Y6I4 AL161713.1-201ENST00000555538 145 ntBASIC5.16□□□□□ -1.58
USP3Q9Y6I4 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC5.16□□□□□ -1.58
USP3Q9Y6I4 MIR3133-201ENST00000583157 78 ntBASIC5.16□□□□□ -1.58
USP3Q9Y6I4 MIR4737-201ENST00000583979 81 ntBASIC5.16□□□□□ -1.58
USP3Q9Y6I4 AC002545.1-201ENST00000592511 181 ntBASIC5.16□□□□□ -1.58
USP3Q9Y6I4 RNU6-6P-201ENST00000606623 107 ntBASIC5.16□□□□□ -1.58
USP3Q9Y6I4 U2.14-201ENST00000615943 113 ntBASIC5.16□□□□□ -1.58
USP3Q9Y6I4 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
USP3Q9Y6I4 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
USP3Q9Y6I4 AC063976.2-201ENST00000425667 3556 ntBASIC5.16□□□□□ -1.58
USP3Q9Y6I4 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
USP3Q9Y6I4 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
USP3Q9Y6I4 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
USP3Q9Y6I4 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
USP3Q9Y6I4 AL391684.1-202ENST00000641293 1636 ntBASIC5.15□□□□□ -1.58
USP3Q9Y6I4 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
USP3Q9Y6I4 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
USP3Q9Y6I4 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.58
USP3Q9Y6I4 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC5.15□□□□□ -1.58
USP3Q9Y6I4 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC5.15□□□□□ -1.58
USP3Q9Y6I4 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.58
USP3Q9Y6I4 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.58
USP3Q9Y6I4 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC5.15□□□□□ -1.58
USP3Q9Y6I4 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
USP3Q9Y6I4 SNORA12.2-201ENST00000391040 156 ntBASIC5.15□□□□□ -1.59
USP3Q9Y6I4 MIR937-201ENST00000401271 86 ntBASIC5.15□□□□□ -1.59
USP3Q9Y6I4 AL357515.1-201ENST00000402967 542 ntBASIC5.15□□□□□ -1.59
USP3Q9Y6I4 AC016769.2-201ENST00000414815 475 ntBASIC5.15□□□□□ -1.59
USP3Q9Y6I4 GNG5P5-201ENST00000420444 220 ntBASIC5.15□□□□□ -1.59
USP3Q9Y6I4 TMEM167AP1-201ENST00000423409 219 ntBASIC5.15□□□□□ -1.59
USP3Q9Y6I4 CKS1BP5-201ENST00000434172 273 ntBASIC5.15□□□□□ -1.59
USP3Q9Y6I4 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC5.15□□□□□ -1.59
USP3Q9Y6I4 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC5.15□□□□□ -1.59
USP3Q9Y6I4 AC079354.2-201ENST00000453523 154 ntBASIC5.15□□□□□ -1.59
USP3Q9Y6I4 AURKAPS2-201ENST00000454983 333 ntBASIC5.15□□□□□ -1.59
USP3Q9Y6I4 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC5.15□□□□□ -1.59
USP3Q9Y6I4 AC010469.2-201ENST00000496412 480 ntBASIC5.15□□□□□ -1.59
USP3Q9Y6I4 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC5.15□□□□□ -1.59
USP3Q9Y6I4 RNU6-612P-201ENST00000516909 102 ntBASIC5.15□□□□□ -1.59
USP3Q9Y6I4 Y_RNA.706-201ENST00000516933 99 ntBASIC5.15□□□□□ -1.59
USP3Q9Y6I4 ATP5F1P5-201ENST00000526403 760 ntBASIC5.15□□□□□ -1.59
USP3Q9Y6I4 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
USP3Q9Y6I4 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC5.15□□□□□ -1.59
USP3Q9Y6I4 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC5.15□□□□□ -1.59
USP3Q9Y6I4 AL121603.1-201ENST00000553815 142 ntBASIC5.15□□□□□ -1.59
USP3Q9Y6I4 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC5.15□□□□□ -1.59
USP3Q9Y6I4 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC5.15□□□□□ -1.59
USP3Q9Y6I4 AC022968.1-201ENST00000567372 442 ntBASIC5.15□□□□□ -1.59
USP3Q9Y6I4 AC136932.1-201ENST00000574771 208 ntBASIC5.15□□□□□ -1.59
USP3Q9Y6I4 AL645944.1-201ENST00000603857 493 ntBASIC5.15□□□□□ -1.59
USP3Q9Y6I4 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC5.15□□□□□ -1.59
USP3Q9Y6I4 CENPF-206ENST00000614578 528 ntTSL 5 BASIC5.15□□□□□ -1.59
USP3Q9Y6I4 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
USP3Q9Y6I4 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.15□□□□□ -1.59
USP3Q9Y6I4 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.59
USP3Q9Y6I4 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC5.15□□□□□ -1.59
USP3Q9Y6I4 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
USP3Q9Y6I4 AC116096.1-201ENST00000566804 2314 ntBASIC5.14□□□□□ -1.59
USP3Q9Y6I4 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
USP3Q9Y6I4 AL138820.1-201ENST00000617901 5305 ntBASIC5.14□□□□□ -1.59
USP3Q9Y6I4 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.14□□□□□ -1.59
USP3Q9Y6I4 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.14□□□□□ -1.59
USP3Q9Y6I4 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
USP3Q9Y6I4 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC5.14□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 122.7 ms