Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 RNU6-143P-201ENST00000516942 93 ntBASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 AC022559.1-201ENST00000520905 205 ntBASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 AC009314.1-201ENST00000603871 304 ntBASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 AP005432.2-201ENST00000608162 586 ntBASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 U2.14-201ENST00000615943 113 ntBASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 RMST_4.1-201ENST00000616886 107 ntBASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 AC009812.4-201ENST00000569134 1805 ntBASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 Y_RNA.358-201ENST00000365491 99 ntBASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 MIR143-201ENST00000385300 106 ntBASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 AL080315.1-201ENST00000406055 466 ntBASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 MIR1182-201ENST00000408363 97 ntBASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 DPPA2P3-201ENST00000411853 655 ntBASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 AF186996.5-201ENST00000418098 904 ntBASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 CHEK2P5-201ENST00000423877 246 ntBASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 AL139148.1-201ENST00000427122 680 ntBASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 MTND3P9-201ENST00000429526 346 ntBASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 AL592045.1-201ENST00000429867 352 ntBASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 AC093414.1-201ENST00000434712 514 ntBASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 AL359073.1-201ENST00000448036 403 ntBASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 AC009963.2-201ENST00000453431 138 ntBASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 RPS29P26-201ENST00000477483 171 ntBASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 RN7SL441P-201ENST00000492388 296 ntBASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 RN7SL591P-201ENST00000496150 292 ntBASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 RNU6-1315P-201ENST00000517187 99 ntBASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 MIR5696-201ENST00000578474 85 ntBASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 MIR1273C-201ENST00000578669 77 ntBASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 FKBP1AP1-201ENST00000594588 318 ntBASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 AC008962.1-201ENST00000605729 304 ntBASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 SSX9-202ENST00000608568 580 ntTSL 4 BASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 LINC02555-201ENST00000563933 1951 ntBASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 AC100778.3-201ENST00000580060 1750 ntBASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 LYST-202ENST00000389794 12985 ntTSL 5 BASIC4.63□□□□□ -1.67
HIF3AQ9Y2N7 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
HIF3AQ9Y2N7 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.62□□□□□ -1.67
HIF3AQ9Y2N7 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
HIF3AQ9Y2N7 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
HIF3AQ9Y2N7 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC4.62□□□□□ -1.67
HIF3AQ9Y2N7 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
HIF3AQ9Y2N7 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
HIF3AQ9Y2N7 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC4.62□□□□□ -1.67
HIF3AQ9Y2N7 Y_RNA.76-201ENST00000362931 109 ntBASIC4.62□□□□□ -1.67
HIF3AQ9Y2N7 Y_RNA.122-201ENST00000363331 96 ntBASIC4.62□□□□□ -1.67
HIF3AQ9Y2N7 MIR301A-201ENST00000385261 86 ntBASIC4.62□□□□□ -1.67
HIF3AQ9Y2N7 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
HIF3AQ9Y2N7 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC4.62□□□□□ -1.67
HIF3AQ9Y2N7 AC108075.1-201ENST00000424692 529 ntBASIC4.62□□□□□ -1.67
HIF3AQ9Y2N7 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC4.62□□□□□ -1.67
HIF3AQ9Y2N7 USP9YP7-201ENST00000436723 430 ntBASIC4.62□□□□□ -1.67
HIF3AQ9Y2N7 RPL35AP21-201ENST00000437667 333 ntBASIC4.62□□□□□ -1.67
HIF3AQ9Y2N7 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.62□□□□□ -1.67
HIF3AQ9Y2N7 USP9YP32-201ENST00000452432 430 ntBASIC4.62□□□□□ -1.67
HIF3AQ9Y2N7 RNU6-1037P-201ENST00000459571 107 ntBASIC4.62□□□□□ -1.67
HIF3AQ9Y2N7 HSPE1P6-201ENST00000479457 291 ntBASIC4.62□□□□□ -1.67
HIF3AQ9Y2N7 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC4.62□□□□□ -1.67
HIF3AQ9Y2N7 AC022493.1-201ENST00000492984 337 ntBASIC4.62□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 115 ms