Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 FABP5P5-201ENST00000515537 406 ntBASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 RNA5SP385-201ENST00000515947 110 ntBASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 SCARNA15.2-201ENST00000516409 127 ntBASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 Y_RNA.688-201ENST00000516565 95 ntBASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 RNU6-840P-201ENST00000517275 65 ntBASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 AP000867.2-201ENST00000532468 320 ntBASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 AHI1-217ENST00000534469 680 ntTSL 3 BASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 ACTR3BP3-201ENST00000565577 979 ntBASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 AC012414.6-201ENST00000568241 401 ntBASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 AC110760.3-201ENST00000598794 467 ntBASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 AC015871.2-201ENST00000603605 948 ntBASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 AC013553.2-201ENST00000604244 589 ntBASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 AC138749.5-201ENST00000611461 208 ntBASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 AC245517.5-201ENST00000611529 162 ntBASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 AC116165.2-201ENST00000616705 206 ntBASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 AL136313.1-201ENST00000624804 202 ntBASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
CPSF3Q9UKF6 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 AC096644.4-201ENST00000563417 2912 ntBASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 RPL21P3-201ENST00000395517 478 ntBASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 EEF1A1P41-201ENST00000414667 207 ntBASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 ATG3P1-201ENST00000419507 911 ntBASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 AC091390.3-201ENST00000426478 338 ntBASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 AC244035.1-201ENST00000430042 390 ntBASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 MTND2P4-201ENST00000445034 1004 ntBASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 AC009237.8-201ENST00000445492 379 ntBASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 ELOCP30-201ENST00000447108 299 ntBASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 GAPDHP27-201ENST00000447427 1020 ntBASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 USP9YP12-201ENST00000450481 570 ntBASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 AC010099.1-201ENST00000455434 375 ntBASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 AC092798.1-201ENST00000458542 409 ntBASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 RNU6-420P-201ENST00000458780 107 ntBASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 AC146507.2-201ENST00000460608 476 ntBASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 RN7SL283P-201ENST00000489055 303 ntBASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 AC083906.5-201ENST00000503722 328 ntBASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 TTC39CP1-201ENST00000512513 755 ntBASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 RN7SKP43-201ENST00000516173 320 ntBASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 RNU6-1256P-201ENST00000516539 103 ntBASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 RNU6-64P-201ENST00000517119 105 ntBASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 AC107934.1-201ENST00000522215 217 ntBASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 DEFB108A-201ENST00000530110 222 ntBASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 AC123904.3-201ENST00000547218 814 ntBASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 AMZ2P1-203ENST00000565833 850 ntBASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 MIR3146-201ENST00000580367 79 ntBASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 MIR4293-201ENST00000584305 78 ntBASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 MIR4506-201ENST00000584693 77 ntBASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 AF038458.1-201ENST00000588406 262 ntBASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 DUXAP4-201ENST00000603046 613 ntBASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 U73023.1-201ENST00000603134 700 ntBASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 AP001981.2-201ENST00000603241 418 ntBASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 OR2AS2P-201ENST00000606902 342 ntBASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 CU459211.1-201ENST00000635667 749 ntBASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
CPSF3Q9UKF6 AP003122.5-201ENST00000527668 3766 ntBASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 AC099654.7-201ENST00000635788 2127 ntBASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 FAM35BP-202ENST00000497389 3337 ntBASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 SNORA9.2-201ENST00000365361 133 ntBASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 RNU6-851P-201ENST00000384565 107 ntBASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 TXNP7-201ENST00000406296 293 ntBASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 RPL21P24-201ENST00000413752 448 ntBASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 RPL7L1P10-201ENST00000427790 463 ntBASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 AC022018.1-201ENST00000430685 241 ntBASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 AC093392.2-201ENST00000450682 337 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 166.8 ms