Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.33□□□□□ -1.88
VPS28Q9UK41 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.33□□□□□ -1.88
VPS28Q9UK41 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC3.33□□□□□ -1.88
VPS28Q9UK41 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.33□□□□□ -1.88
VPS28Q9UK41 MTND5P27-201ENST00000428871 1720 ntBASIC3.33□□□□□ -1.88
VPS28Q9UK41 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
VPS28Q9UK41 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
VPS28Q9UK41 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.32□□□□□ -1.88
VPS28Q9UK41 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
VPS28Q9UK41 AC008669.1-201ENST00000565823 2178 ntBASIC3.32□□□□□ -1.88
VPS28Q9UK41 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
VPS28Q9UK41 RNY3P9-201ENST00000384727 106 ntBASIC3.32□□□□□ -1.88
VPS28Q9UK41 MIR888-201ENST00000401186 77 ntBASIC3.32□□□□□ -1.88
VPS28Q9UK41 AL353678.1-201ENST00000422735 741 ntBASIC3.32□□□□□ -1.88
VPS28Q9UK41 AC137499.1-201ENST00000427602 88 ntBASIC3.32□□□□□ -1.88
VPS28Q9UK41 ELOCP14-201ENST00000428070 331 ntBASIC3.32□□□□□ -1.88
VPS28Q9UK41 MTND1P28-201ENST00000435623 950 ntBASIC3.32□□□□□ -1.88
VPS28Q9UK41 CST9LP2-201ENST00000437612 320 ntBASIC3.32□□□□□ -1.88
VPS28Q9UK41 ELOCP7-201ENST00000439968 331 ntBASIC3.32□□□□□ -1.88
VPS28Q9UK41 NEFMP1-201ENST00000443423 1006 ntBASIC3.32□□□□□ -1.88
VPS28Q9UK41 TAF9P1-201ENST00000445421 515 ntBASIC3.32□□□□□ -1.88
VPS28Q9UK41 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS28Q9UK41 TAF9P2-201ENST00000454958 515 ntBASIC3.32□□□□□ -1.88
VPS28Q9UK41 RPL12P25-201ENST00000455592 494 ntBASIC3.32□□□□□ -1.88
VPS28Q9UK41 RPS29P12-201ENST00000460178 152 ntBASIC3.32□□□□□ -1.88
VPS28Q9UK41 MTCO2P29-201ENST00000465212 189 ntBASIC3.32□□□□□ -1.88
VPS28Q9UK41 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC3.32□□□□□ -1.88
VPS28Q9UK41 RN7SL504P-201ENST00000494496 287 ntBASIC3.32□□□□□ -1.88
VPS28Q9UK41 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS28Q9UK41 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS28Q9UK41 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.32□□□□□ -1.88
VPS28Q9UK41 AP003122.4-201ENST00000530980 758 ntBASIC3.32□□□□□ -1.88
VPS28Q9UK41 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.32□□□□□ -1.88
VPS28Q9UK41 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.32□□□□□ -1.88
VPS28Q9UK41 AHI1-217ENST00000534469 680 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS28Q9UK41 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS28Q9UK41 AL391261.3-201ENST00000557194 520 ntBASIC3.32□□□□□ -1.88
VPS28Q9UK41 RPL21P12-201ENST00000559810 515 ntBASIC3.32□□□□□ -1.88
VPS28Q9UK41 HMGN1P30-201ENST00000589286 268 ntBASIC3.32□□□□□ -1.88
VPS28Q9UK41 BNIP3P8-201ENST00000597863 560 ntBASIC3.32□□□□□ -1.88
VPS28Q9UK41 AC025811.1-201ENST00000604312 472 ntBASIC3.32□□□□□ -1.88
VPS28Q9UK41 AL161798.1-201ENST00000604630 131 ntBASIC3.32□□□□□ -1.88
VPS28Q9UK41 AC007619.2-201ENST00000605743 379 ntBASIC3.32□□□□□ -1.88
VPS28Q9UK41 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC3.32□□□□□ -1.88
VPS28Q9UK41 AC068880.5-201ENST00000624331 290 ntBASIC3.32□□□□□ -1.88
VPS28Q9UK41 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
VPS28Q9UK41 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
VPS28Q9UK41 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.32□□□□□ -1.88
VPS28Q9UK41 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.32□□□□□ -1.88
VPS28Q9UK41 AL359693.1-201ENST00000614959 2407 ntBASIC3.32□□□□□ -1.88
VPS28Q9UK41 AL137003.2-201ENST00000606924 2538 ntBASIC3.32□□□□□ -1.88
VPS28Q9UK41 UBE2L2-201ENST00000254302 429 ntBASIC3.31□□□□□ -1.88
VPS28Q9UK41 RNU1-105P-201ENST00000363470 161 ntBASIC3.31□□□□□ -1.88
VPS28Q9UK41 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
VPS28Q9UK41 AL139397.2-201ENST00000404529 772 ntBASIC3.31□□□□□ -1.88
VPS28Q9UK41 AL021407.1-201ENST00000404531 386 ntBASIC3.31□□□□□ -1.88
VPS28Q9UK41 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.31□□□□□ -1.88
VPS28Q9UK41 RNU2-8P-201ENST00000410727 190 ntBASIC3.31□□□□□ -1.88
VPS28Q9UK41 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC3.31□□□□□ -1.88
VPS28Q9UK41 DPPA2P1-201ENST00000428060 556 ntBASIC3.31□□□□□ -1.88
VPS28Q9UK41 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.31□□□□□ -1.88
VPS28Q9UK41 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.31□□□□□ -1.88
VPS28Q9UK41 SNRPEP9-201ENST00000436794 238 ntBASIC3.31□□□□□ -1.88
VPS28Q9UK41 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.31□□□□□ -1.88
VPS28Q9UK41 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC3.31□□□□□ -1.88
VPS28Q9UK41 AC010587.1-201ENST00000505809 469 ntBASIC3.31□□□□□ -1.88
VPS28Q9UK41 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.31□□□□□ -1.88
VPS28Q9UK41 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.31□□□□□ -1.88
VPS28Q9UK41 RAC1P5-201ENST00000512182 576 ntBASIC3.31□□□□□ -1.88
VPS28Q9UK41 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC3.31□□□□□ -1.88
VPS28Q9UK41 Y_RNA.672-201ENST00000516289 104 ntBASIC3.31□□□□□ -1.88
VPS28Q9UK41 RNU6-1092P-201ENST00000516955 87 ntBASIC3.31□□□□□ -1.88
VPS28Q9UK41 RNA5SP471-201ENST00000516971 106 ntBASIC3.31□□□□□ -1.88
VPS28Q9UK41 RNA5SP337-201ENST00000517007 109 ntBASIC3.31□□□□□ -1.88
VPS28Q9UK41 RN7SKP57-201ENST00000517248 293 ntBASIC3.31□□□□□ -1.88
VPS28Q9UK41 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.31□□□□□ -1.88
VPS28Q9UK41 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC3.31□□□□□ -1.88
VPS28Q9UK41 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC3.31□□□□□ -1.88
VPS28Q9UK41 AC087373.1-201ENST00000524920 491 ntBASIC3.31□□□□□ -1.88
VPS28Q9UK41 MGST1-215ENST00000540056 546 ntTSL 3 BASIC3.31□□□□□ -1.88
VPS28Q9UK41 ARL1-211ENST00000551828 776 ntTSL 5 BASIC3.31□□□□□ -1.88
VPS28Q9UK41 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.31□□□□□ -1.88
VPS28Q9UK41 TRAV37-201ENST00000553906 342 ntBASIC3.31□□□□□ -1.88
VPS28Q9UK41 AC009977.1-201ENST00000586015 570 ntBASIC3.31□□□□□ -1.88
VPS28Q9UK41 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.31□□□□□ -1.88
VPS28Q9UK41 YPEL5P2-201ENST00000605553 359 ntBASIC3.31□□□□□ -1.88
VPS28Q9UK41 AC068276.1-201ENST00000605793 379 ntBASIC3.31□□□□□ -1.88
VPS28Q9UK41 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC3.31□□□□□ -1.88
VPS28Q9UK41 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC3.31□□□□□ -1.88
VPS28Q9UK41 AC110079.1-202ENST00000635213 138 ntBASIC3.31□□□□□ -1.88
VPS28Q9UK41 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
VPS28Q9UK41 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
VPS28Q9UK41 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.31□□□□□ -1.88
VPS28Q9UK41 AC004972.1-201ENST00000623934 2209 ntBASIC3.31□□□□□ -1.88
VPS28Q9UK41 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
VPS28Q9UK41 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
VPS28Q9UK41 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
VPS28Q9UK41 RNU5E-6P-201ENST00000365574 115 ntBASIC3.3□□□□□ -1.88
VPS28Q9UK41 RNU6-817P-201ENST00000391083 104 ntBASIC3.3□□□□□ -1.88
VPS28Q9UK41 RNA5SP229-201ENST00000410809 99 ntBASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 143 ms