Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 RAB9BP1-201ENST00000519581 626 ntBASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 AC024940.3-201ENST00000538551 316 ntBASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 AC004024.1-201ENST00000549244 247 ntBASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 AC023824.2-201ENST00000566185 400 ntBASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 AC093799.2-201ENST00000610062 578 ntBASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 RNA5SP439-201ENST00000617595 124 ntBASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.52
LIMD1Q9UGP4 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.52
LIMD1Q9UGP4 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
LIMD1Q9UGP4 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.52
LIMD1Q9UGP4 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.52
LIMD1Q9UGP4 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
LIMD1Q9UGP4 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.52
LIMD1Q9UGP4 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 Y_RNA.44-201ENST00000362676 108 ntBASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 RNU6-78P-201ENST00000362897 107 ntBASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 RN7SKP224-201ENST00000364140 325 ntBASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 RNA5SP223-201ENST00000365174 120 ntBASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 RNU6-629P-201ENST00000384061 103 ntBASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 RNU6-187P-201ENST00000384139 106 ntBASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 RPL11P3-201ENST00000395256 523 ntBASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 BX276092.6-201ENST00000430476 250 ntBASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 Z82188.1-201ENST00000436709 154 ntBASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 H2AFZP5-201ENST00000446960 382 ntBASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 GAPDHP25-201ENST00000447061 1001 ntBASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 BX276092.8-201ENST00000455722 250 ntBASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 U8.22-201ENST00000459141 133 ntBASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 RPL7P49-201ENST00000471402 708 ntBASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 RN7SKP276-201ENST00000516242 268 ntBASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 RNA5SP165-201ENST00000517142 115 ntBASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 RNA5SP373-201ENST00000517271 95 ntBASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 AF186190.1-201ENST00000517470 480 ntBASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 MRPS36P4-201ENST00000534436 298 ntBASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 RMST_6.1-201ENST00000611980 203 ntBASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 MIR7641-1-201ENST00000627518 61 ntBASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 Clostridiales-1.2-201ENST00000636724 160 ntBASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
LIMD1Q9UGP4 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
LIMD1Q9UGP4 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
LIMD1Q9UGP4 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC5.57□□□□□ -1.52
LIMD1Q9UGP4 GVINP1-202ENST00000531871 7271 ntBASIC5.57□□□□□ -1.52
LIMD1Q9UGP4 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
LIMD1Q9UGP4 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
LIMD1Q9UGP4 RNU6-326P-201ENST00000365480 107 ntBASIC5.57□□□□□ -1.52
LIMD1Q9UGP4 RNU6-17P-201ENST00000384245 107 ntBASIC5.57□□□□□ -1.52
LIMD1Q9UGP4 RNU6-18P-201ENST00000384527 107 ntBASIC5.57□□□□□ -1.52
LIMD1Q9UGP4 MIR600-201ENST00000385007 98 ntBASIC5.57□□□□□ -1.52
LIMD1Q9UGP4 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC5.57□□□□□ -1.52
LIMD1Q9UGP4 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC5.57□□□□□ -1.52
LIMD1Q9UGP4 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC5.57□□□□□ -1.52
LIMD1Q9UGP4 AC138761.5-201ENST00000433967 325 ntBASIC5.57□□□□□ -1.52
LIMD1Q9UGP4 AC099670.2-201ENST00000435130 321 ntBASIC5.57□□□□□ -1.52
LIMD1Q9UGP4 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC5.57□□□□□ -1.52
LIMD1Q9UGP4 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC5.57□□□□□ -1.52
LIMD1Q9UGP4 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC5.57□□□□□ -1.52
LIMD1Q9UGP4 AC010285.1-201ENST00000470580 392 ntBASIC5.57□□□□□ -1.52
LIMD1Q9UGP4 RPL31P13-201ENST00000484151 370 ntBASIC5.57□□□□□ -1.52
LIMD1Q9UGP4 AC022133.1-201ENST00000490961 571 ntBASIC5.57□□□□□ -1.52
LIMD1Q9UGP4 RNU6-255P-201ENST00000516957 105 ntBASIC5.57□□□□□ -1.52
LIMD1Q9UGP4 AC024405.2-202ENST00000532731 184 ntBASIC5.57□□□□□ -1.52
LIMD1Q9UGP4 MIR4643-201ENST00000577473 78 ntBASIC5.57□□□□□ -1.52
LIMD1Q9UGP4 AC008745.1-201ENST00000604064 271 ntBASIC5.57□□□□□ -1.52
LIMD1Q9UGP4 SNORD113-5-201ENST00000607261 78 ntBASIC5.57□□□□□ -1.52
LIMD1Q9UGP4 AC099506.2-201ENST00000623074 221 ntBASIC5.57□□□□□ -1.52
LIMD1Q9UGP4 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
LIMD1Q9UGP4 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
LIMD1Q9UGP4 SAMMSON-226ENST00000642089 1582 ntBASIC5.57□□□□□ -1.52
LIMD1Q9UGP4 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
LIMD1Q9UGP4 AC009541.1-201ENST00000438279 2662 ntBASIC5.57□□□□□ -1.52
LIMD1Q9UGP4 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
LIMD1Q9UGP4 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 130.8 ms