Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC2.8□□□□□ -1.96
DDX28Q9NUL7 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC2.8□□□□□ -1.96
DDX28Q9NUL7 RNU6-232P-201ENST00000517144 64 ntBASIC2.8□□□□□ -1.96
DDX28Q9NUL7 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC2.8□□□□□ -1.96
DDX28Q9NUL7 MTND4LP18-201ENST00000526864 291 ntBASIC2.8□□□□□ -1.96
DDX28Q9NUL7 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC2.8□□□□□ -1.96
DDX28Q9NUL7 AC128657.1-201ENST00000549459 145 ntBASIC2.8□□□□□ -1.96
DDX28Q9NUL7 AC034105.3-201ENST00000565294 442 ntBASIC2.8□□□□□ -1.96
DDX28Q9NUL7 AC138761.3-201ENST00000579993 334 ntBASIC2.8□□□□□ -1.96
DDX28Q9NUL7 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC2.8□□□□□ -1.96
DDX28Q9NUL7 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
DDX28Q9NUL7 AC012493.2-201ENST00000595083 291 ntBASIC2.8□□□□□ -1.96
DDX28Q9NUL7 RPL23AP78-201ENST00000599928 470 ntBASIC2.8□□□□□ -1.96
DDX28Q9NUL7 CKS1BP3-201ENST00000600888 237 ntBASIC2.8□□□□□ -1.96
DDX28Q9NUL7 uc_338.25-201ENST00000613756 156 ntBASIC2.8□□□□□ -1.96
DDX28Q9NUL7 AC122133.1-201ENST00000613964 233 ntBASIC2.8□□□□□ -1.96
DDX28Q9NUL7 AL161629.2-201ENST00000615347 275 ntBASIC2.8□□□□□ -1.96
DDX28Q9NUL7 AC009159.1-201ENST00000618386 642 ntBASIC2.8□□□□□ -1.96
DDX28Q9NUL7 AC005858.4-201ENST00000623191 700 ntBASIC2.8□□□□□ -1.96
DDX28Q9NUL7 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.8□□□□□ -1.96
DDX28Q9NUL7 IL33-203ENST00000456383 2501 ntTSL 5 BASIC2.8□□□□□ -1.96
DDX28Q9NUL7 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.8□□□□□ -1.96
DDX28Q9NUL7 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
DDX28Q9NUL7 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
DDX28Q9NUL7 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
DDX28Q9NUL7 RNU6-1284P-201ENST00000363701 100 ntBASIC2.79□□□□□ -1.96
DDX28Q9NUL7 RNU6-1180P-201ENST00000364935 107 ntBASIC2.79□□□□□ -1.96
DDX28Q9NUL7 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
DDX28Q9NUL7 RNU6-217P-201ENST00000384164 104 ntBASIC2.79□□□□□ -1.96
DDX28Q9NUL7 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC2.79□□□□□ -1.96
DDX28Q9NUL7 Z99497.1-201ENST00000421282 135 ntBASIC2.79□□□□□ -1.96
DDX28Q9NUL7 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC2.79□□□□□ -1.96
DDX28Q9NUL7 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC2.79□□□□□ -1.96
DDX28Q9NUL7 AC244035.1-201ENST00000430042 390 ntBASIC2.79□□□□□ -1.96
DDX28Q9NUL7 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC2.79□□□□□ -1.96
DDX28Q9NUL7 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC2.79□□□□□ -1.96
DDX28Q9NUL7 RPL22P17-201ENST00000438729 315 ntBASIC2.79□□□□□ -1.96
DDX28Q9NUL7 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC2.79□□□□□ -1.96
DDX28Q9NUL7 AL133217.1-201ENST00000450980 425 ntBASIC2.79□□□□□ -1.96
DDX28Q9NUL7 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC2.79□□□□□ -1.96
DDX28Q9NUL7 AIG1P1-201ENST00000503376 148 ntBASIC2.79□□□□□ -1.96
DDX28Q9NUL7 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC2.79□□□□□ -1.96
DDX28Q9NUL7 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC2.79□□□□□ -1.96
DDX28Q9NUL7 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.79□□□□□ -1.96
DDX28Q9NUL7 MTND5P13-201ENST00000513046 1079 ntBASIC2.79□□□□□ -1.96
DDX28Q9NUL7 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC2.79□□□□□ -1.96
DDX28Q9NUL7 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC2.79□□□□□ -1.96
DDX28Q9NUL7 RNU6-927P-201ENST00000516199 100 ntBASIC2.79□□□□□ -1.96
DDX28Q9NUL7 RNU1-103P-201ENST00000516502 125 ntBASIC2.79□□□□□ -1.96
DDX28Q9NUL7 RNU6-826P-201ENST00000516827 104 ntBASIC2.79□□□□□ -1.96
DDX28Q9NUL7 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC2.79□□□□□ -1.96
DDX28Q9NUL7 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC2.79□□□□□ -1.96
DDX28Q9NUL7 MIR5680-201ENST00000577577 84 ntBASIC2.79□□□□□ -1.96
DDX28Q9NUL7 MIR3146-201ENST00000580367 79 ntBASIC2.79□□□□□ -1.96
DDX28Q9NUL7 MIR4293-201ENST00000584305 78 ntBASIC2.79□□□□□ -1.96
DDX28Q9NUL7 AC083760.1-201ENST00000589621 670 ntBASIC2.79□□□□□ -1.96
DDX28Q9NUL7 NIFKP6-201ENST00000598115 845 ntBASIC2.79□□□□□ -1.96
DDX28Q9NUL7 AC010620.2-201ENST00000600135 313 ntBASIC2.79□□□□□ -1.96
DDX28Q9NUL7 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC2.79□□□□□ -1.96
DDX28Q9NUL7 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC2.79□□□□□ -1.96
DDX28Q9NUL7 AC239868.4-201ENST00000608318 671 ntBASIC2.79□□□□□ -1.96
DDX28Q9NUL7 AL162274.2-201ENST00000614406 332 ntBASIC2.79□□□□□ -1.96
DDX28Q9NUL7 AC073308.1-201ENST00000623696 305 ntBASIC2.79□□□□□ -1.96
DDX28Q9NUL7 AL136313.1-201ENST00000624804 202 ntBASIC2.79□□□□□ -1.96
DDX28Q9NUL7 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC2.79□□□□□ -1.96
DDX28Q9NUL7 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
DDX28Q9NUL7 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC2.78□□□□□ -1.96
DDX28Q9NUL7 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC2.78□□□□□ -1.96
DDX28Q9NUL7 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
DDX28Q9NUL7 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC2.78□□□□□ -1.96
DDX28Q9NUL7 IARS-201ENST00000375627 697 ntTSL 3 BASIC2.78□□□□□ -1.96
DDX28Q9NUL7 RNU6-809P-201ENST00000384461 107 ntBASIC2.78□□□□□ -1.96
DDX28Q9NUL7 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
DDX28Q9NUL7 AL359634.1-202ENST00000404721 284 ntBASIC2.78□□□□□ -1.96
DDX28Q9NUL7 RNU4-72P-201ENST00000410754 173 ntBASIC2.78□□□□□ -1.96
DDX28Q9NUL7 AL513477.1-202ENST00000417061 214 ntBASIC2.78□□□□□ -1.96
DDX28Q9NUL7 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC2.78□□□□□ -1.96
DDX28Q9NUL7 AC099548.1-201ENST00000421443 426 ntBASIC2.78□□□□□ -1.96
DDX28Q9NUL7 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC2.78□□□□□ -1.96
DDX28Q9NUL7 AL353678.1-201ENST00000422735 741 ntBASIC2.78□□□□□ -1.96
DDX28Q9NUL7 AL365203.2-201ENST00000423444 196 ntBASIC2.78□□□□□ -1.96
DDX28Q9NUL7 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC2.78□□□□□ -1.96
DDX28Q9NUL7 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC2.78□□□□□ -1.96
DDX28Q9NUL7 AC129850.1-201ENST00000436203 508 ntBASIC2.78□□□□□ -1.96
DDX28Q9NUL7 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC2.78□□□□□ -1.96
DDX28Q9NUL7 AL714022.1-201ENST00000439897 151 ntBASIC2.78□□□□□ -1.96
DDX28Q9NUL7 RPS12P18-201ENST00000442381 270 ntBASIC2.78□□□□□ -1.96
DDX28Q9NUL7 AC118469.1-201ENST00000442943 488 ntBASIC2.78□□□□□ -1.96
DDX28Q9NUL7 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.78□□□□□ -1.96
DDX28Q9NUL7 AC013267.1-201ENST00000458227 267 ntBASIC2.78□□□□□ -1.96
DDX28Q9NUL7 RPL23AP11-201ENST00000475260 469 ntBASIC2.78□□□□□ -1.96
DDX28Q9NUL7 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC2.78□□□□□ -1.96
DDX28Q9NUL7 AC116337.2-201ENST00000477662 156 ntBASIC2.78□□□□□ -1.96
DDX28Q9NUL7 AL160314.1-201ENST00000490836 438 ntBASIC2.78□□□□□ -1.96
DDX28Q9NUL7 AC112204.1-201ENST00000502591 103 ntBASIC2.78□□□□□ -1.96
DDX28Q9NUL7 RAC1P5-201ENST00000512182 576 ntBASIC2.78□□□□□ -1.96
DDX28Q9NUL7 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.78□□□□□ -1.96
DDX28Q9NUL7 AC090136.1-201ENST00000520009 240 ntBASIC2.78□□□□□ -1.96
DDX28Q9NUL7 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC2.78□□□□□ -1.96
DDX28Q9NUL7 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC2.78□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms