Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC3.97□□□□□ -1.77
CCDC140Q96MF4 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC3.97□□□□□ -1.77
CCDC140Q96MF4 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.97□□□□□ -1.77
CCDC140Q96MF4 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC3.97□□□□□ -1.77
CCDC140Q96MF4 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC3.97□□□□□ -1.77
CCDC140Q96MF4 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.97□□□□□ -1.77
CCDC140Q96MF4 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC3.97□□□□□ -1.77
CCDC140Q96MF4 MIR4660-201ENST00000583549 74 ntBASIC3.97□□□□□ -1.77
CCDC140Q96MF4 AL355598.1-201ENST00000604169 202 ntBASIC3.97□□□□□ -1.77
CCDC140Q96MF4 MTND4LP5-201ENST00000605152 292 ntBASIC3.97□□□□□ -1.77
CCDC140Q96MF4 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC3.97□□□□□ -1.77
CCDC140Q96MF4 AL021997.2-201ENST00000615674 271 ntBASIC3.97□□□□□ -1.77
CCDC140Q96MF4 CCT5-215ENST00000625723 135 ntTSL 5 BASIC3.97□□□□□ -1.77
CCDC140Q96MF4 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC3.97□□□□□ -1.77
CCDC140Q96MF4 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
CCDC140Q96MF4 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC140Q96MF4 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC3.97□□□□□ -1.77
CCDC140Q96MF4 AL445487.1-201ENST00000415694 1580 ntBASIC3.97□□□□□ -1.77
CCDC140Q96MF4 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
CCDC140Q96MF4 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC140Q96MF4 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC140Q96MF4 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.97□□□□□ -1.77
CCDC140Q96MF4 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
CCDC140Q96MF4 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.77
CCDC140Q96MF4 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC3.96□□□□□ -1.77
CCDC140Q96MF4 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.77
CCDC140Q96MF4 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.77
CCDC140Q96MF4 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC3.96□□□□□ -1.77
CCDC140Q96MF4 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC3.96□□□□□ -1.78
CCDC140Q96MF4 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC140Q96MF4 AL672296.1-201ENST00000427780 2158 ntBASIC3.96□□□□□ -1.78
CCDC140Q96MF4 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC3.96□□□□□ -1.78
CCDC140Q96MF4 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC140Q96MF4 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC3.96□□□□□ -1.78
CCDC140Q96MF4 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC140Q96MF4 OR51H2P-202ENST00000641424 3046 ntBASIC3.96□□□□□ -1.78
CCDC140Q96MF4 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC140Q96MF4 RNU6-227P-201ENST00000362865 103 ntBASIC3.96□□□□□ -1.78
CCDC140Q96MF4 RN7SKP113-201ENST00000363891 295 ntBASIC3.96□□□□□ -1.78
CCDC140Q96MF4 SNORA2.3-201ENST00000383920 135 ntBASIC3.96□□□□□ -1.78
CCDC140Q96MF4 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC3.96□□□□□ -1.78
CCDC140Q96MF4 ATP6V1G1P7-201ENST00000415853 349 ntBASIC3.96□□□□□ -1.78
CCDC140Q96MF4 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC3.96□□□□□ -1.78
CCDC140Q96MF4 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC3.96□□□□□ -1.78
CCDC140Q96MF4 BX323845.1-201ENST00000432417 179 ntBASIC3.96□□□□□ -1.78
CCDC140Q96MF4 RPS6P12-201ENST00000432491 726 ntBASIC3.96□□□□□ -1.78
CCDC140Q96MF4 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.96□□□□□ -1.78
CCDC140Q96MF4 AC007389.2-201ENST00000434630 306 ntBASIC3.96□□□□□ -1.78
CCDC140Q96MF4 RPL21P2-201ENST00000440049 481 ntBASIC3.96□□□□□ -1.78
CCDC140Q96MF4 RPL7AP61-201ENST00000443410 636 ntBASIC3.96□□□□□ -1.78
CCDC140Q96MF4 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC140Q96MF4 MTATP6P7-201ENST00000453315 681 ntBASIC3.96□□□□□ -1.78
CCDC140Q96MF4 AL389915.2-201ENST00000454576 441 ntBASIC3.96□□□□□ -1.78
CCDC140Q96MF4 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC3.96□□□□□ -1.78
CCDC140Q96MF4 SNRPGP5-201ENST00000456003 220 ntBASIC3.96□□□□□ -1.78
CCDC140Q96MF4 RNA5SP310-201ENST00000459084 116 ntBASIC3.96□□□□□ -1.78
CCDC140Q96MF4 AC010655.3-201ENST00000478818 450 ntBASIC3.96□□□□□ -1.78
CCDC140Q96MF4 RN7SL30P-201ENST00000488416 306 ntBASIC3.96□□□□□ -1.78
CCDC140Q96MF4 AC004980.4-201ENST00000513375 203 ntBASIC3.96□□□□□ -1.78
CCDC140Q96MF4 SNORA43.2-201ENST00000516652 128 ntBASIC3.96□□□□□ -1.78
CCDC140Q96MF4 RNA5SP34-201ENST00000516887 130 ntBASIC3.96□□□□□ -1.78
CCDC140Q96MF4 SNORA31.18-201ENST00000517043 134 ntBASIC3.96□□□□□ -1.78
CCDC140Q96MF4 AC022616.4-201ENST00000522985 181 ntBASIC3.96□□□□□ -1.78
CCDC140Q96MF4 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC3.96□□□□□ -1.78
CCDC140Q96MF4 AC110588.1-201ENST00000559699 137 ntBASIC3.96□□□□□ -1.78
CCDC140Q96MF4 MIR1269B-201ENST00000580405 75 ntBASIC3.96□□□□□ -1.78
CCDC140Q96MF4 PRR13P7-201ENST00000605538 430 ntBASIC3.96□□□□□ -1.78
CCDC140Q96MF4 AL110115.1-201ENST00000614396 364 ntBASIC3.96□□□□□ -1.78
CCDC140Q96MF4 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.96□□□□□ -1.78
CCDC140Q96MF4 U2.21-201ENST00000637295 81 ntBASIC3.96□□□□□ -1.78
CCDC140Q96MF4 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC140Q96MF4 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC3.96□□□□□ -1.78
CCDC140Q96MF4 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC140Q96MF4 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC3.96□□□□□ -1.78
CCDC140Q96MF4 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC140Q96MF4 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.96□□□□□ -1.78
CCDC140Q96MF4 AC032011.1-201ENST00000611703 1549 ntBASIC3.95□□□□□ -1.78
CCDC140Q96MF4 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC140Q96MF4 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC140Q96MF4 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC3.95□□□□□ -1.78
CCDC140Q96MF4 AC063976.2-201ENST00000425667 3556 ntBASIC3.95□□□□□ -1.78
CCDC140Q96MF4 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC3.95□□□□□ -1.78
CCDC140Q96MF4 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC3.95□□□□□ -1.78
CCDC140Q96MF4 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
CCDC140Q96MF4 Y_RNA.106-201ENST00000363189 100 ntBASIC3.95□□□□□ -1.78
CCDC140Q96MF4 RNU6-778P-201ENST00000363269 103 ntBASIC3.95□□□□□ -1.78
CCDC140Q96MF4 Y_RNA.152-201ENST00000363578 100 ntBASIC3.95□□□□□ -1.78
CCDC140Q96MF4 Y_RNA.380-201ENST00000365663 111 ntBASIC3.95□□□□□ -1.78
CCDC140Q96MF4 MIR223-201ENST00000385204 110 ntBASIC3.95□□□□□ -1.78
CCDC140Q96MF4 RNU6-1109P-201ENST00000391187 107 ntBASIC3.95□□□□□ -1.78
CCDC140Q96MF4 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC3.95□□□□□ -1.78
CCDC140Q96MF4 COX6CP13-201ENST00000428703 226 ntBASIC3.95□□□□□ -1.78
CCDC140Q96MF4 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC3.95□□□□□ -1.78
CCDC140Q96MF4 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC3.95□□□□□ -1.78
CCDC140Q96MF4 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC3.95□□□□□ -1.78
CCDC140Q96MF4 AC098831.1-201ENST00000440661 216 ntBASIC3.95□□□□□ -1.78
CCDC140Q96MF4 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC3.95□□□□□ -1.78
CCDC140Q96MF4 RPL37P4-201ENST00000448908 268 ntBASIC3.95□□□□□ -1.78
CCDC140Q96MF4 AC092647.2-201ENST00000452998 253 ntBASIC3.95□□□□□ -1.78
CCDC140Q96MF4 MTCO3P8-201ENST00000453691 755 ntBASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 164.4 ms