Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
CCDC42Q96M95 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
CCDC42Q96M95 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC1.87□□□□□ -2.11
CCDC42Q96M95 MTCO2P31-201ENST00000402702 684 ntBASIC1.87□□□□□ -2.11
CCDC42Q96M95 AL356131.1-201ENST00000405826 414 ntBASIC1.87□□□□□ -2.11
CCDC42Q96M95 GSTA9P-201ENST00000406231 611 ntBASIC1.87□□□□□ -2.11
CCDC42Q96M95 AL450338.1-201ENST00000407987 512 ntBASIC1.87□□□□□ -2.11
CCDC42Q96M95 MIR1294-201ENST00000408503 142 ntBASIC1.87□□□□□ -2.11
CCDC42Q96M95 RNU2-49P-201ENST00000410666 184 ntBASIC1.87□□□□□ -2.11
CCDC42Q96M95 AL357078.2-201ENST00000416486 427 ntBASIC1.87□□□□□ -2.11
CCDC42Q96M95 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC1.87□□□□□ -2.11
CCDC42Q96M95 RGS5-217ENST00000451759 835 ntTSL 3 BASIC1.87□□□□□ -2.11
CCDC42Q96M95 USP9YP34-201ENST00000453983 808 ntBASIC1.87□□□□□ -2.11
CCDC42Q96M95 RPL30P9-201ENST00000465586 330 ntBASIC1.87□□□□□ -2.11
CCDC42Q96M95 AC098591.2-201ENST00000510152 315 ntBASIC1.87□□□□□ -2.11
CCDC42Q96M95 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC1.87□□□□□ -2.11
CCDC42Q96M95 SNORA31.25-201ENST00000517242 134 ntBASIC1.87□□□□□ -2.11
CCDC42Q96M95 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC1.87□□□□□ -2.11
CCDC42Q96M95 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC1.87□□□□□ -2.11
CCDC42Q96M95 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
CCDC42Q96M95 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC1.87□□□□□ -2.11
CCDC42Q96M95 AC104229.1-201ENST00000561364 255 ntBASIC1.87□□□□□ -2.11
CCDC42Q96M95 AC104581.2-201ENST00000572227 430 ntBASIC1.87□□□□□ -2.11
CCDC42Q96M95 DUXAP11-201ENST00000603858 526 ntBASIC1.87□□□□□ -2.11
CCDC42Q96M95 AC004520.1-201ENST00000608362 1413 ntBASIC1.87□□□□□ -2.11
CCDC42Q96M95 SCARNA15.3-201ENST00000626315 122 ntBASIC1.87□□□□□ -2.11
CCDC42Q96M95 SCARNA4.1-201ENST00000628597 123 ntBASIC1.87□□□□□ -2.11
CCDC42Q96M95 AP006437.1-201ENST00000641440 3685 ntBASIC1.87□□□□□ -2.11
CCDC42Q96M95 AC011477.1-204ENST00000623416 1325 ntBASIC1.87□□□□□ -2.11
CCDC42Q96M95 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
CCDC42Q96M95 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
CCDC42Q96M95 RNA5SP125-201ENST00000364843 120 ntBASIC1.86□□□□□ -2.11
CCDC42Q96M95 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
CCDC42Q96M95 RNU6-741P-201ENST00000383889 107 ntBASIC1.86□□□□□ -2.11
CCDC42Q96M95 RNU1-148P-201ENST00000384472 162 ntBASIC1.86□□□□□ -2.11
CCDC42Q96M95 RNU6-253P-201ENST00000384730 105 ntBASIC1.86□□□□□ -2.11
CCDC42Q96M95 RNA5SP270-201ENST00000411361 118 ntBASIC1.86□□□□□ -2.11
CCDC42Q96M95 SNORD56-201ENST00000413522 71 ntBASIC1.86□□□□□ -2.11
CCDC42Q96M95 CCDC58P2-201ENST00000417131 366 ntBASIC1.86□□□□□ -2.11
CCDC42Q96M95 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC1.86□□□□□ -2.11
CCDC42Q96M95 AL645568.3-201ENST00000433683 316 ntBASIC1.86□□□□□ -2.11
CCDC42Q96M95 AC004383.1-201ENST00000438135 289 ntBASIC1.86□□□□□ -2.11
CCDC42Q96M95 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC1.86□□□□□ -2.11
CCDC42Q96M95 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC1.86□□□□□ -2.11
CCDC42Q96M95 AL353691.1-201ENST00000451332 387 ntBASIC1.86□□□□□ -2.11
CCDC42Q96M95 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC1.86□□□□□ -2.11
CCDC42Q96M95 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC1.86□□□□□ -2.11
CCDC42Q96M95 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC1.86□□□□□ -2.11
CCDC42Q96M95 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC1.86□□□□□ -2.11
CCDC42Q96M95 RNU6-551P-201ENST00000516661 103 ntBASIC1.86□□□□□ -2.11
CCDC42Q96M95 SCARNA3-201ENST00000517097 143 ntBASIC1.86□□□□□ -2.11
CCDC42Q96M95 RNU2-19P-201ENST00000517288 84 ntBASIC1.86□□□□□ -2.11
CCDC42Q96M95 AP003066.2-201ENST00000529375 555 ntBASIC1.86□□□□□ -2.11
CCDC42Q96M95 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC1.86□□□□□ -2.11
CCDC42Q96M95 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC1.86□□□□□ -2.11
CCDC42Q96M95 AC110588.1-201ENST00000559699 137 ntBASIC1.86□□□□□ -2.11
CCDC42Q96M95 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC1.86□□□□□ -2.11
CCDC42Q96M95 LARP7P2-201ENST00000575306 125 ntBASIC1.86□□□□□ -2.11
CCDC42Q96M95 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC1.86□□□□□ -2.11
CCDC42Q96M95 AC008121.1-201ENST00000603244 268 ntBASIC1.86□□□□□ -2.11
CCDC42Q96M95 RPAP2P1-201ENST00000603626 1168 ntBASIC1.86□□□□□ -2.11
CCDC42Q96M95 AL021997.1-201ENST00000605757 193 ntBASIC1.86□□□□□ -2.11
CCDC42Q96M95 MIR6130-201ENST00000619419 109 ntBASIC1.86□□□□□ -2.11
CCDC42Q96M95 AC026634.1-201ENST00000634369 198 ntBASIC1.86□□□□□ -2.11
CCDC42Q96M95 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
CCDC42Q96M95 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.86□□□□□ -2.11
CCDC42Q96M95 AL390862.1-201ENST00000635467 1469 ntBASIC1.86□□□□□ -2.11
CCDC42Q96M95 HSPA8P4-201ENST00000511877 1920 ntBASIC1.85□□□□□ -2.11
CCDC42Q96M95 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
CCDC42Q96M95 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC1.85□□□□□ -2.11
CCDC42Q96M95 MIR9-3-201ENST00000385084 90 ntBASIC1.85□□□□□ -2.11
CCDC42Q96M95 AL136133.1-201ENST00000413694 376 ntBASIC1.85□□□□□ -2.11
CCDC42Q96M95 RPL23AP39-201ENST00000415533 405 ntBASIC1.85□□□□□ -2.11
CCDC42Q96M95 AC096649.2-201ENST00000416186 393 ntBASIC1.85□□□□□ -2.11
CCDC42Q96M95 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC1.85□□□□□ -2.11
CCDC42Q96M95 UBE2D3P1-201ENST00000436669 444 ntBASIC1.85□□□□□ -2.11
CCDC42Q96M95 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC1.85□□□□□ -2.11
CCDC42Q96M95 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC1.85□□□□□ -2.11
CCDC42Q96M95 SUMO2P2-201ENST00000456482 255 ntBASIC1.85□□□□□ -2.11
CCDC42Q96M95 CDC42P1-201ENST00000456658 548 ntBASIC1.85□□□□□ -2.11
CCDC42Q96M95 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC1.85□□□□□ -2.11
CCDC42Q96M95 AL121769.1-201ENST00000469473 401 ntBASIC1.85□□□□□ -2.11
CCDC42Q96M95 AC079203.1-201ENST00000487972 404 ntBASIC1.85□□□□□ -2.11
CCDC42Q96M95 AC034222.1-201ENST00000494052 532 ntBASIC1.85□□□□□ -2.11
CCDC42Q96M95 AC118282.2-201ENST00000508739 374 ntBASIC1.85□□□□□ -2.11
CCDC42Q96M95 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC1.85□□□□□ -2.11
CCDC42Q96M95 HMGB1P1-201ENST00000522557 636 ntBASIC1.85□□□□□ -2.11
CCDC42Q96M95 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC1.85□□□□□ -2.11
CCDC42Q96M95 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.85□□□□□ -2.11
CCDC42Q96M95 MIR4435-1-201ENST00000582552 80 ntBASIC1.85□□□□□ -2.11
CCDC42Q96M95 AL109918.3-201ENST00000603072 338 ntBASIC1.85□□□□□ -2.11
CCDC42Q96M95 AC087241.4-201ENST00000612441 480 ntBASIC1.85□□□□□ -2.11
CCDC42Q96M95 AL589743.7-201ENST00000612637 233 ntBASIC1.85□□□□□ -2.11
CCDC42Q96M95 AC110994.2-201ENST00000635481 492 ntBASIC1.85□□□□□ -2.11
CCDC42Q96M95 AC010149.2-201ENST00000637608 315 ntBASIC1.85□□□□□ -2.11
CCDC42Q96M95 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.85□□□□□ -2.11
CCDC42Q96M95 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
CCDC42Q96M95 IL33-202ENST00000417746 2327 ntTSL 2 BASIC1.84□□□□□ -2.11
CCDC42Q96M95 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC1.84□□□□□ -2.11
CCDC42Q96M95 OR1L1-202ENST00000373686 1083 ntBASIC1.84□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms