Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AC015912.2-201ENST00000571053 181 ntBASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 AP001029.3-201ENST00000588063 596 ntBASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 AL022345.1-201ENST00000607292 135 ntBASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 AC023043.4-201ENST00000612081 449 ntBASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 uc_338.22-201ENST00000622722 187 ntBASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC4.24□□□□□ -1.73
CLIP3Q96DZ5 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 AL672296.1-201ENST00000427780 2158 ntBASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 Y_RNA.100-201ENST00000363141 102 ntBASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 Y_RNA.197-201ENST00000364004 102 ntBASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 RNU6-960P-201ENST00000364056 120 ntBASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 U3.12-201ENST00000364498 214 ntBASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 SNORD6-201ENST00000365444 73 ntBASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 MDM4-202ENST00000367180 547 ntTSL 3 BASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 MIR513A2-201ENST00000385249 127 ntBASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 RPS23P10-201ENST00000416185 486 ntBASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 RPL23AP25-201ENST00000430973 463 ntBASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 RPL32P28-201ENST00000443577 397 ntBASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 AC020550.1-201ENST00000447385 163 ntBASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 MTCO1P29-201ENST00000496868 288 ntBASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 PARP4P3-201ENST00000510265 317 ntBASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 NDUFB4P9-201ENST00000511646 388 ntBASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 RNU4-29P-201ENST00000515943 174 ntBASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 Y_RNA.720-201ENST00000517166 92 ntBASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 RNU6-794P-201ENST00000517261 64 ntBASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 RPL7P20-201ENST00000520308 745 ntBASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 AC022634.1-201ENST00000520765 532 ntBASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 AC091178.1-203ENST00000584586 279 ntBASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 BPIFA4P-203ENST00000603168 689 ntBASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 AC090425.1-201ENST00000610007 140 ntBASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC4.23□□□□□ -1.73
CLIP3Q96DZ5 OR4G2P-202ENST00000641004 1759 ntBASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 Y_RNA.367-201ENST00000365544 101 ntBASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 RNU4-48P-201ENST00000365559 182 ntBASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 RNU6-38P-201ENST00000384085 107 ntBASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 RNU6-308P-201ENST00000390957 107 ntBASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 AC017083.1-201ENST00000428093 483 ntBASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 AL356867.1-201ENST00000429623 299 ntBASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 RPS20P5-201ENST00000434808 360 ntBASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 SNRPEP4-201ENST00000435815 279 ntBASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 NUTF2P3-201ENST00000448540 384 ntBASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 RNU6-333P-201ENST00000459117 107 ntBASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 RNU7-170P-201ENST00000459303 61 ntBASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 RNU7-66P-201ENST00000459469 62 ntBASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 SCARNA15.2-201ENST00000516409 127 ntBASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 MAL2-206ENST00000522187 547 ntTSL 4 BASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 AP005435.4-201ENST00000529514 284 ntBASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 AC063950.1-201ENST00000552036 308 ntBASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 AC022968.1-201ENST00000567372 442 ntBASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 MIR3138-201ENST00000585238 82 ntBASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 APOOP1-201ENST00000604695 592 ntBASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 AC110741.2-201ENST00000605278 268 ntBASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 uc_338.15-201ENST00000615470 191 ntBASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 AC087588.2-201ENST00000617667 426 ntBASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 81.4 ms