Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 HSPE1P6-201ENST00000479457 291 ntBASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 AC012158.1-204ENST00000483430 465 ntBASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 SCARNA22-201ENST00000503991 125 ntBASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 AC091868.1-201ENST00000508746 304 ntBASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 BNIP3P1-201ENST00000547295 580 ntBASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 AC133555.2-201ENST00000550213 292 ntBASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 FAM27B-201ENST00000610601 213 ntBASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 AL049555.1-201ENST00000562834 1933 ntBASIC4.54□□□□□ -1.68
UBE3DQ7Z6J8 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
UBE3DQ7Z6J8 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
UBE3DQ7Z6J8 AL365440.1-201ENST00000436135 2167 ntBASIC4.54□□□□□ -1.68
UBE3DQ7Z6J8 AL391684.1-202ENST00000641293 1636 ntBASIC4.54□□□□□ -1.68
UBE3DQ7Z6J8 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.54□□□□□ -1.68
UBE3DQ7Z6J8 UBE2L2-201ENST00000254302 429 ntBASIC4.54□□□□□ -1.68
UBE3DQ7Z6J8 Y_RNA.183-201ENST00000363882 113 ntBASIC4.54□□□□□ -1.68
UBE3DQ7Z6J8 SNORA58B-201ENST00000364259 136 ntBASIC4.54□□□□□ -1.68
UBE3DQ7Z6J8 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
UBE3DQ7Z6J8 RNU6-700P-201ENST00000391043 107 ntBASIC4.54□□□□□ -1.68
UBE3DQ7Z6J8 RNA5SP113-201ENST00000410486 84 ntBASIC4.54□□□□□ -1.68
UBE3DQ7Z6J8 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC4.54□□□□□ -1.68
UBE3DQ7Z6J8 RPL12P3-201ENST00000440080 396 ntBASIC4.54□□□□□ -1.68
UBE3DQ7Z6J8 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC4.54□□□□□ -1.68
UBE3DQ7Z6J8 MTND4LP30-201ENST00000454092 297 ntBASIC4.54□□□□□ -1.68
UBE3DQ7Z6J8 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC4.54□□□□□ -1.68
UBE3DQ7Z6J8 RN7SL826P-201ENST00000479724 288 ntBASIC4.54□□□□□ -1.68
UBE3DQ7Z6J8 FO393415.2-201ENST00000480085 343 ntBASIC4.54□□□□□ -1.68
UBE3DQ7Z6J8 AC020890.1-201ENST00000491837 504 ntBASIC4.54□□□□□ -1.68
UBE3DQ7Z6J8 SUMO2P6-201ENST00000505273 288 ntBASIC4.54□□□□□ -1.68
UBE3DQ7Z6J8 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC4.54□□□□□ -1.68
UBE3DQ7Z6J8 MTND1P19-201ENST00000511780 315 ntBASIC4.54□□□□□ -1.68
UBE3DQ7Z6J8 AC007016.1-201ENST00000512110 244 ntBASIC4.54□□□□□ -1.68
UBE3DQ7Z6J8 RNU6-897P-201ENST00000517135 105 ntBASIC4.54□□□□□ -1.68
UBE3DQ7Z6J8 AL121603.1-201ENST00000553815 142 ntBASIC4.54□□□□□ -1.68
UBE3DQ7Z6J8 MIR5696-201ENST00000578474 85 ntBASIC4.54□□□□□ -1.68
UBE3DQ7Z6J8 DLEU2_2.2-201ENST00000615474 90 ntBASIC4.54□□□□□ -1.68
UBE3DQ7Z6J8 SDR42E1P4-201ENST00000620894 481 ntBASIC4.54□□□□□ -1.68
UBE3DQ7Z6J8 Z99571.1-201ENST00000636677 394 ntBASIC4.54□□□□□ -1.68
UBE3DQ7Z6J8 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
UBE3DQ7Z6J8 AL592437.2-201ENST00000421655 2434 ntBASIC4.54□□□□□ -1.68
UBE3DQ7Z6J8 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC4.54□□□□□ -1.68
UBE3DQ7Z6J8 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
UBE3DQ7Z6J8 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
UBE3DQ7Z6J8 MTND5P6-201ENST00000422338 1798 ntBASIC4.53□□□□□ -1.68
UBE3DQ7Z6J8 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.53□□□□□ -1.68
UBE3DQ7Z6J8 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.53□□□□□ -1.68
UBE3DQ7Z6J8 ZNF72P-201ENST00000425869 1908 ntBASIC4.53□□□□□ -1.68
UBE3DQ7Z6J8 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
UBE3DQ7Z6J8 Y_RNA.20-201ENST00000362479 113 ntBASIC4.53□□□□□ -1.68
UBE3DQ7Z6J8 Y_RNA.33-201ENST00000362591 102 ntBASIC4.53□□□□□ -1.68
UBE3DQ7Z6J8 RNU1-76P-201ENST00000362903 159 ntBASIC4.53□□□□□ -1.68
UBE3DQ7Z6J8 RNU6-595P-201ENST00000363944 107 ntBASIC4.53□□□□□ -1.68
UBE3DQ7Z6J8 SNORA69.1-201ENST00000390904 137 ntBASIC4.53□□□□□ -1.68
UBE3DQ7Z6J8 AL592291.1-201ENST00000403830 352 ntBASIC4.53□□□□□ -1.68
UBE3DQ7Z6J8 AL592045.1-201ENST00000429867 352 ntBASIC4.53□□□□□ -1.68
UBE3DQ7Z6J8 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC4.53□□□□□ -1.68
UBE3DQ7Z6J8 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC4.53□□□□□ -1.68
UBE3DQ7Z6J8 RANP8-201ENST00000444720 713 ntBASIC4.53□□□□□ -1.68
UBE3DQ7Z6J8 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC4.53□□□□□ -1.68
UBE3DQ7Z6J8 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.53□□□□□ -1.68
UBE3DQ7Z6J8 RPS5P7-201ENST00000456664 608 ntBASIC4.53□□□□□ -1.68
UBE3DQ7Z6J8 TRBVB-201ENST00000477100 408 ntBASIC4.53□□□□□ -1.68
UBE3DQ7Z6J8 RPL30P10-201ENST00000488148 337 ntBASIC4.53□□□□□ -1.68
UBE3DQ7Z6J8 IGLV2-34-201ENST00000490007 283 ntBASIC4.53□□□□□ -1.68
UBE3DQ7Z6J8 AP003733.2-201ENST00000529409 171 ntBASIC4.53□□□□□ -1.68
UBE3DQ7Z6J8 AP001880.2-201ENST00000538233 448 ntBASIC4.53□□□□□ -1.68
UBE3DQ7Z6J8 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC4.53□□□□□ -1.68
UBE3DQ7Z6J8 TRAV37-201ENST00000553906 342 ntBASIC4.53□□□□□ -1.68
UBE3DQ7Z6J8 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC4.53□□□□□ -1.68
UBE3DQ7Z6J8 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.53□□□□□ -1.68
UBE3DQ7Z6J8 AC064801.1-201ENST00000612025 407 ntBASIC4.53□□□□□ -1.68
UBE3DQ7Z6J8 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC4.53□□□□□ -1.68
UBE3DQ7Z6J8 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.53□□□□□ -1.68
UBE3DQ7Z6J8 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
UBE3DQ7Z6J8 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.53□□□□□ -1.68
UBE3DQ7Z6J8 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
UBE3DQ7Z6J8 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
UBE3DQ7Z6J8 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
UBE3DQ7Z6J8 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC4.53□□□□□ -1.68
UBE3DQ7Z6J8 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
UBE3DQ7Z6J8 AC093535.2-201ENST00000624769 2326 ntBASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 SALL4P2-201ENST00000423288 2910 ntBASIC4.52□□□□□ -1.69
UBE3DQ7Z6J8 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 177.7 ms