Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AL357134.1-201ENST00000445848 426 ntBASIC0.97□□□□□ -2.25
USF3Q68DE3 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC0.97□□□□□ -2.25
USF3Q68DE3 BTF3P12-201ENST00000519620 469 ntBASIC0.97□□□□□ -2.25
USF3Q68DE3 CIR1P1-201ENST00000524055 1133 ntBASIC0.97□□□□□ -2.25
USF3Q68DE3 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC0.97□□□□□ -2.25
USF3Q68DE3 AC008269.2-201ENST00000561915 1105 ntBASIC0.97□□□□□ -2.25
USF3Q68DE3 AC008749.1-201ENST00000597650 306 ntBASIC0.97□□□□□ -2.25
USF3Q68DE3 AL391834.1-201ENST00000609609 560 ntBASIC0.97□□□□□ -2.25
USF3Q68DE3 AC093838.1-201ENST00000613014 469 ntBASIC0.97□□□□□ -2.25
USF3Q68DE3 AC073592.7-201ENST00000623659 507 ntBASIC0.97□□□□□ -2.25
USF3Q68DE3 MFSD8-213ENST00000641134 1327 ntBASIC0.96□□□□□ -2.25
USF3Q68DE3 RNU6-1072P-201ENST00000384703 107 ntBASIC0.96□□□□□ -2.26
USF3Q68DE3 RNU6-443P-201ENST00000384780 107 ntBASIC0.96□□□□□ -2.26
USF3Q68DE3 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC0.96□□□□□ -2.26
USF3Q68DE3 NUP35P2-201ENST00000416748 943 ntBASIC0.96□□□□□ -2.26
USF3Q68DE3 NCOR1P1-202ENST00000486162 291 ntBASIC0.96□□□□□ -2.26
USF3Q68DE3 RN7SKP265-201ENST00000516448 223 ntBASIC0.96□□□□□ -2.26
USF3Q68DE3 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC0.96□□□□□ -2.26
USF3Q68DE3 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC0.96□□□□□ -2.26
USF3Q68DE3 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC0.96□□□□□ -2.26
USF3Q68DE3 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC0.96□□□□□ -2.26
USF3Q68DE3 U73023.1-201ENST00000603134 700 ntBASIC0.96□□□□□ -2.26
USF3Q68DE3 RMST_5.1-201ENST00000618704 126 ntBASIC0.96□□□□□ -2.26
USF3Q68DE3 AC068620.4-201ENST00000636730 1182 ntBASIC0.96□□□□□ -2.26
USF3Q68DE3 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC0.96□□□□□ -2.26
USF3Q68DE3 SNORD65-201ENST00000391079 73 ntBASIC0.96□□□□□ -2.26
USF3Q68DE3 RNU6-955P-201ENST00000410497 104 ntBASIC0.96□□□□□ -2.26
USF3Q68DE3 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC0.96□□□□□ -2.26
USF3Q68DE3 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC0.96□□□□□ -2.26
USF3Q68DE3 MTND2P29-201ENST00000438595 412 ntBASIC0.96□□□□□ -2.26
USF3Q68DE3 PSPHP1-201ENST00000450062 261 ntBASIC0.96□□□□□ -2.26
USF3Q68DE3 AL121769.1-201ENST00000469473 401 ntBASIC0.96□□□□□ -2.26
USF3Q68DE3 AL135752.1-201ENST00000479477 471 ntBASIC0.96□□□□□ -2.26
USF3Q68DE3 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC0.96□□□□□ -2.26
USF3Q68DE3 ARL2BPP4-201ENST00000506854 471 ntBASIC0.96□□□□□ -2.26
USF3Q68DE3 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC0.96□□□□□ -2.26
USF3Q68DE3 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC0.96□□□□□ -2.26
USF3Q68DE3 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC0.96□□□□□ -2.26
USF3Q68DE3 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC0.96□□□□□ -2.26
USF3Q68DE3 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC0.96□□□□□ -2.26
USF3Q68DE3 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC0.96□□□□□ -2.26
USF3Q68DE3 AC055764.2-201ENST00000610089 670 ntBASIC0.96□□□□□ -2.26
USF3Q68DE3 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC0.96□□□□□ -2.26
USF3Q68DE3 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC0.95□□□□□ -2.26
USF3Q68DE3 RNU6-1181P-201ENST00000384191 106 ntBASIC0.95□□□□□ -2.26
USF3Q68DE3 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC0.95□□□□□ -2.26
USF3Q68DE3 MTND5P25-201ENST00000430499 799 ntBASIC0.95□□□□□ -2.26
USF3Q68DE3 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC0.95□□□□□ -2.26
USF3Q68DE3 RNF2P1-201ENST00000442955 1010 ntBASIC0.95□□□□□ -2.26
USF3Q68DE3 RPS29P23-201ENST00000458635 123 ntBASIC0.95□□□□□ -2.26
USF3Q68DE3 snoU109.4-201ENST00000458953 143 ntBASIC0.95□□□□□ -2.26
USF3Q68DE3 RNU1-98P-201ENST00000458992 160 ntBASIC0.95□□□□□ -2.26
USF3Q68DE3 AC087879.1-201ENST00000474343 374 ntBASIC0.95□□□□□ -2.26
USF3Q68DE3 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC0.95□□□□□ -2.26
USF3Q68DE3 AC025768.1-201ENST00000510057 267 ntBASIC0.95□□□□□ -2.26
USF3Q68DE3 UBE2L4-201ENST00000587688 464 ntBASIC0.95□□□□□ -2.26
USF3Q68DE3 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC0.95□□□□□ -2.26
USF3Q68DE3 AC068880.5-201ENST00000624331 290 ntBASIC0.95□□□□□ -2.26
USF3Q68DE3 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.95□□□□□ -2.26
USF3Q68DE3 AC091812.1-201ENST00000432235 1948 ntBASIC0.95□□□□□ -2.26
USF3Q68DE3 CCT4P2-201ENST00000233836 1548 ntBASIC0.95□□□□□ -2.26
USF3Q68DE3 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC0.95□□□□□ -2.26
USF3Q68DE3 SFR1P1-201ENST00000403720 688 ntBASIC0.95□□□□□ -2.26
USF3Q68DE3 CYCSP33-201ENST00000414485 327 ntBASIC0.95□□□□□ -2.26
USF3Q68DE3 ARL2BPP3-201ENST00000421226 480 ntBASIC0.95□□□□□ -2.26
USF3Q68DE3 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC0.95□□□□□ -2.26
USF3Q68DE3 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC0.95□□□□□ -2.26
USF3Q68DE3 AC097493.1-201ENST00000463958 372 ntBASIC0.95□□□□□ -2.26
USF3Q68DE3 RN7SKP179-201ENST00000516126 217 ntBASIC0.95□□□□□ -2.26
USF3Q68DE3 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC0.95□□□□□ -2.26
USF3Q68DE3 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC0.95□□□□□ -2.26
USF3Q68DE3 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC0.94□□□□□ -2.26
USF3Q68DE3 RNU4-38P-201ENST00000364472 129 ntBASIC0.94□□□□□ -2.26
USF3Q68DE3 RNY1P4-201ENST00000384595 115 ntBASIC0.94□□□□□ -2.26
USF3Q68DE3 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.94□□□□□ -2.26
USF3Q68DE3 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC0.94□□□□□ -2.26
USF3Q68DE3 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC0.94□□□□□ -2.26
USF3Q68DE3 THAP5P1-201ENST00000439089 262 ntBASIC0.94□□□□□ -2.26
USF3Q68DE3 OSTCP8-201ENST00000445117 448 ntBASIC0.94□□□□□ -2.26
USF3Q68DE3 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
USF3Q68DE3 OR5BM1P-201ENST00000512021 366 ntBASIC0.94□□□□□ -2.26
USF3Q68DE3 SNORA31.20-201ENST00000517111 133 ntBASIC0.94□□□□□ -2.26
USF3Q68DE3 AC087272.1-201ENST00000523624 533 ntBASIC0.94□□□□□ -2.26
USF3Q68DE3 CYCSP26-201ENST00000534107 320 ntBASIC0.94□□□□□ -2.26
USF3Q68DE3 AC113194.1-201ENST00000606037 500 ntBASIC0.94□□□□□ -2.26
USF3Q68DE3 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC0.94□□□□□ -2.26
USF3Q68DE3 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.93□□□□□ -2.26
USF3Q68DE3 RNU6-1105P-201ENST00000384774 107 ntBASIC0.93□□□□□ -2.26
USF3Q68DE3 RNU1-139P-201ENST00000391307 165 ntBASIC0.93□□□□□ -2.26
USF3Q68DE3 MIR1250-201ENST00000408098 113 ntBASIC0.93□□□□□ -2.26
USF3Q68DE3 AL356320.2-201ENST00000417263 507 ntBASIC0.93□□□□□ -2.26
USF3Q68DE3 TRAPPC2P4-201ENST00000421750 331 ntBASIC0.93□□□□□ -2.26
USF3Q68DE3 XKRYP1-201ENST00000423438 492 ntBASIC0.93□□□□□ -2.26
USF3Q68DE3 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC0.93□□□□□ -2.26
USF3Q68DE3 AC234781.2-201ENST00000426370 994 ntBASIC0.93□□□□□ -2.26
USF3Q68DE3 XKRYP2-201ENST00000432915 492 ntBASIC0.93□□□□□ -2.26
USF3Q68DE3 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC0.93□□□□□ -2.26
USF3Q68DE3 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC0.93□□□□□ -2.26
USF3Q68DE3 AC026801.1-201ENST00000497178 464 ntBASIC0.93□□□□□ -2.26
USF3Q68DE3 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms