Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 RNU6-420P-201ENST00000458780 107 ntBASIC4.15□□□□□ -1.75
VPS53Q5VIR6 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC4.15□□□□□ -1.75
VPS53Q5VIR6 AC083798.1-201ENST00000472671 131 ntBASIC4.15□□□□□ -1.75
VPS53Q5VIR6 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC4.15□□□□□ -1.75
VPS53Q5VIR6 AC021205.2-201ENST00000480069 347 ntBASIC4.15□□□□□ -1.75
VPS53Q5VIR6 RN7SL293P-201ENST00000481765 281 ntBASIC4.15□□□□□ -1.75
VPS53Q5VIR6 AC110768.1-201ENST00000509222 400 ntBASIC4.15□□□□□ -1.75
VPS53Q5VIR6 AC098799.2-201ENST00000509466 868 ntBASIC4.15□□□□□ -1.75
VPS53Q5VIR6 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC4.15□□□□□ -1.75
VPS53Q5VIR6 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC4.15□□□□□ -1.75
VPS53Q5VIR6 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC4.15□□□□□ -1.75
VPS53Q5VIR6 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC4.15□□□□□ -1.75
VPS53Q5VIR6 AL590099.1-201ENST00000615276 138 ntBASIC4.15□□□□□ -1.75
VPS53Q5VIR6 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC4.15□□□□□ -1.75
VPS53Q5VIR6 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.75
VPS53Q5VIR6 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
VPS53Q5VIR6 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
VPS53Q5VIR6 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.75
VPS53Q5VIR6 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC4.15□□□□□ -1.75
VPS53Q5VIR6 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
VPS53Q5VIR6 HSP90AA4P-202ENST00000506915 2228 ntBASIC4.14□□□□□ -1.75
VPS53Q5VIR6 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC4.14□□□□□ -1.75
VPS53Q5VIR6 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC4.14□□□□□ -1.75
VPS53Q5VIR6 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS53Q5VIR6 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS53Q5VIR6 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
VPS53Q5VIR6 Y_RNA.38-201ENST00000362617 102 ntBASIC4.14□□□□□ -1.75
VPS53Q5VIR6 RNU6-797P-201ENST00000363101 109 ntBASIC4.14□□□□□ -1.75
VPS53Q5VIR6 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC4.14□□□□□ -1.75
VPS53Q5VIR6 MIR19A-201ENST00000384878 82 ntBASIC4.14□□□□□ -1.75
VPS53Q5VIR6 RNU2-47P-201ENST00000410649 186 ntBASIC4.14□□□□□ -1.75
VPS53Q5VIR6 RNU6-55P-201ENST00000411092 107 ntBASIC4.14□□□□□ -1.75
VPS53Q5VIR6 RNU6-954P-201ENST00000411355 107 ntBASIC4.14□□□□□ -1.75
VPS53Q5VIR6 AL159169.1-201ENST00000421119 127 ntBASIC4.14□□□□□ -1.75
VPS53Q5VIR6 AC007283.2-201ENST00000424739 197 ntBASIC4.14□□□□□ -1.75
VPS53Q5VIR6 FTH1P1-201ENST00000437933 532 ntBASIC4.14□□□□□ -1.75
VPS53Q5VIR6 FDX1P2-201ENST00000450769 375 ntBASIC4.14□□□□□ -1.75
VPS53Q5VIR6 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS53Q5VIR6 HMGN2P16-201ENST00000456802 261 ntBASIC4.14□□□□□ -1.75
VPS53Q5VIR6 AC004801.2-202ENST00000463559 283 ntBASIC4.14□□□□□ -1.75
VPS53Q5VIR6 RPL7P47-201ENST00000497299 556 ntBASIC4.14□□□□□ -1.75
VPS53Q5VIR6 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC4.14□□□□□ -1.75
VPS53Q5VIR6 SNORA70.19-201ENST00000516717 90 ntBASIC4.14□□□□□ -1.75
VPS53Q5VIR6 IGKV2-26-201ENST00000518305 343 ntBASIC4.14□□□□□ -1.75
VPS53Q5VIR6 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC4.14□□□□□ -1.75
VPS53Q5VIR6 OR4T1P-201ENST00000554933 911 ntBASIC4.14□□□□□ -1.75
VPS53Q5VIR6 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC4.14□□□□□ -1.75
VPS53Q5VIR6 U3.45-201ENST00000607547 219 ntBASIC4.14□□□□□ -1.75
VPS53Q5VIR6 TUG1_1.1-201ENST00000610654 145 ntBASIC4.14□□□□□ -1.75
VPS53Q5VIR6 AL355810.1-201ENST00000614629 552 ntBASIC4.14□□□□□ -1.75
VPS53Q5VIR6 AC063943.3-201ENST00000615562 356 ntBASIC4.14□□□□□ -1.75
VPS53Q5VIR6 AC104985.2-201ENST00000620598 500 ntBASIC4.14□□□□□ -1.75
VPS53Q5VIR6 AC110801.1-201ENST00000623590 212 ntBASIC4.14□□□□□ -1.75
VPS53Q5VIR6 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC4.14□□□□□ -1.75
VPS53Q5VIR6 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC4.14□□□□□ -1.75
VPS53Q5VIR6 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
VPS53Q5VIR6 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC4.14□□□□□ -1.75
VPS53Q5VIR6 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
VPS53Q5VIR6 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC4.14□□□□□ -1.75
VPS53Q5VIR6 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC4.13□□□□□ -1.75
VPS53Q5VIR6 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
VPS53Q5VIR6 RNA5SP197-201ENST00000363357 119 ntBASIC4.13□□□□□ -1.75
VPS53Q5VIR6 RNU6-173P-201ENST00000364215 104 ntBASIC4.13□□□□□ -1.75
VPS53Q5VIR6 DEFB109C-201ENST00000382575 264 ntBASIC4.13□□□□□ -1.75
VPS53Q5VIR6 DEFB109B-201ENST00000382656 264 ntBASIC4.13□□□□□ -1.75
VPS53Q5VIR6 MIR183-201ENST00000384958 110 ntBASIC4.13□□□□□ -1.75
VPS53Q5VIR6 RNU2-62P-201ENST00000410868 191 ntBASIC4.13□□□□□ -1.75
VPS53Q5VIR6 RNU2-41P-201ENST00000410991 178 ntBASIC4.13□□□□□ -1.75
VPS53Q5VIR6 BEND7P1-201ENST00000422058 457 ntBASIC4.13□□□□□ -1.75
VPS53Q5VIR6 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC4.13□□□□□ -1.75
VPS53Q5VIR6 SNRPEP8-201ENST00000442866 260 ntBASIC4.13□□□□□ -1.75
VPS53Q5VIR6 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC4.13□□□□□ -1.75
VPS53Q5VIR6 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC4.13□□□□□ -1.75
VPS53Q5VIR6 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC4.13□□□□□ -1.75
VPS53Q5VIR6 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC4.13□□□□□ -1.75
VPS53Q5VIR6 AC108059.3-201ENST00000456388 214 ntBASIC4.13□□□□□ -1.75
VPS53Q5VIR6 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC4.13□□□□□ -1.75
VPS53Q5VIR6 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC4.13□□□□□ -1.75
VPS53Q5VIR6 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC4.13□□□□□ -1.75
VPS53Q5VIR6 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC4.13□□□□□ -1.75
VPS53Q5VIR6 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC4.13□□□□□ -1.75
VPS53Q5VIR6 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC4.13□□□□□ -1.75
VPS53Q5VIR6 AF235103.2-201ENST00000525753 346 ntBASIC4.13□□□□□ -1.75
VPS53Q5VIR6 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC4.13□□□□□ -1.75
VPS53Q5VIR6 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC4.13□□□□□ -1.75
VPS53Q5VIR6 SNRPGP16-201ENST00000533275 226 ntBASIC4.13□□□□□ -1.75
VPS53Q5VIR6 NACA-211ENST00000548563 827 ntTSL 5 BASIC4.13□□□□□ -1.75
VPS53Q5VIR6 FAM60BP-201ENST00000578364 658 ntBASIC4.13□□□□□ -1.75
VPS53Q5VIR6 COX6CP3-201ENST00000580869 223 ntBASIC4.13□□□□□ -1.75
VPS53Q5VIR6 AC005730.3-201ENST00000583067 366 ntBASIC4.13□□□□□ -1.75
VPS53Q5VIR6 AL136363.1-201ENST00000605349 337 ntBASIC4.13□□□□□ -1.75
VPS53Q5VIR6 AL359314.1-201ENST00000616913 261 ntBASIC4.13□□□□□ -1.75
VPS53Q5VIR6 AC009033.1-201ENST00000624279 431 ntBASIC4.13□□□□□ -1.75
VPS53Q5VIR6 AC099654.5-201ENST00000636479 350 ntBASIC4.13□□□□□ -1.75
VPS53Q5VIR6 MIR3662-201ENST00000637030 95 ntBASIC4.13□□□□□ -1.75
VPS53Q5VIR6 U6.105-201ENST00000637379 88 ntBASIC4.13□□□□□ -1.75
VPS53Q5VIR6 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC4.13□□□□□ -1.75
VPS53Q5VIR6 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
VPS53Q5VIR6 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC4.12□□□□□ -1.75
VPS53Q5VIR6 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms